Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EL242_RS00770 Genome accession   NZ_LR134495
Coordinates   146322..146660 (+) Length   112 a.a.
NCBI ID   WP_126301134.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain NCTC10643     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141322..151660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL242_RS00745 (NCTC10643_00150) rpsL 141561..141935 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  EL242_RS00750 (NCTC10643_00151) rfaC 142056..143015 (-) 960 WP_126301131.1 lipopolysaccharide heptosyltransferase RfaC -
  EL242_RS00755 (NCTC10643_00152) waaF 143083..144120 (-) 1038 WP_126301132.1 lipopolysaccharide heptosyltransferase II -
  EL242_RS00760 (NCTC10643_00153) - 144230..144646 (-) 417 WP_020824267.1 MliC family protein -
  EL242_RS00765 (NCTC10643_00154) - 144710..146029 (-) 1320 WP_126301133.1 LysM-like peptidoglycan-binding domain-containing protein -
  EL242_RS00770 (NCTC10643_00155) comEA/comE1 146322..146660 (+) 339 WP_126301134.1 ComEA family DNA-binding protein Machinery gene
  EL242_RS00775 (NCTC10643_00156) asd 146825..147715 (+) 891 WP_126301135.1 archaetidylserine decarboxylase -
  EL242_RS00780 (NCTC10643_00157) gshAB 147884..150160 (+) 2277 WP_126302679.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  EL242_RS00785 (NCTC10643_00158) manX 150482..151459 (+) 978 WP_006251954.1 PTS mannose transporter subunit IIAB -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12169.95 Da        Isoelectric Point: 9.7287

>NTDB_id=1123255 EL242_RS00770 WP_126301134.1 146322..146660(+) (comEA/comE1) [Mannheimia haemolytica strain NCTC10643]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNEVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=1123255 EL242_RS00770 WP_126301134.1 146322..146660(+) (comEA/comE1) [Mannheimia haemolytica strain NCTC10643]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGAAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.292

100

0.598
  comEA Vibrio cholerae C6706

54.651

76.786

0.42
  comEA Vibrio cholerae strain A1552

54.651

76.786

0.42
  comE1/comEA Haemophilus influenzae Rd KW20

63.077

58.036

0.366
  comEA Vibrio campbellii strain DS40M4

41

89.286

0.366

Multiple sequence alignment