Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL320_RS08745 Genome accession   NZ_LR134493
Coordinates   1795367..1796887 (-) Length   506 a.a.
NCBI ID   WP_126531089.1    Uniprot ID   A0A448S8L7
Organism   Serratia rubidaea strain NCTC10036     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1790367..1801887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL320_RS08735 (NCTC10036_01722) hdfR 1794054..1794881 (-) 828 WP_126533517.1 HTH-type transcriptional regulator HdfR -
  EL320_RS08740 (NCTC10036_01723) - 1795002..1795340 (+) 339 WP_054307720.1 DUF413 domain-containing protein -
  EL320_RS08745 (NCTC10036_01724) comM 1795367..1796887 (-) 1521 WP_126531089.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL320_RS08750 (NCTC10036_01725) - 1797220..1798452 (+) 1233 WP_054307718.1 MFS transporter -
  EL320_RS08755 ilvL 1798586..1798684 (+) 99 WP_015962288.1 ilv operon leader peptide -
  EL320_RS08760 (NCTC10036_01726) ilvG 1798827..1800473 (+) 1647 WP_126531090.1 acetolactate synthase 2 catalytic subunit -
  EL320_RS08765 (NCTC10036_01727) ilvM 1800470..1800736 (+) 267 WP_015962286.1 acetolactate synthase 2 small subunit -
  EL320_RS08770 (NCTC10036_01728) - 1800757..1801683 (+) 927 WP_015962285.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54526.95 Da        Isoelectric Point: 8.8278

>NTDB_id=1123223 EL320_RS08745 WP_126531089.1 1795367..1796887(-) (comM) [Serratia rubidaea strain NCTC10036]
MSLAVIFTRATLGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALLNNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIPADRLAEHEFLGELALSGALRAVSGAIPAAMAAQQDGRGLILPVENEGEVGLLPKEGTRVATHL
LAVCAFLLGQGELSLAQPPAAPPNANRGDLQDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLTDQ
EALESVAVASLQHQPAGRLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRTLDALREPLES
GEIVISRASAKVCFPARIQLIAAMNPSPTGHYQGMHNRTPPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGTLSKQQEPG
ESSQQVRQRVIAARERQLQRAGKINAILGKREVDRDCPLCDADAHYLETTLLKLGLSVRAWHRILKVARTLADLAGEKHI
ARHHLSEALGYRRMERLLIQLHRSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1123223 EL320_RS08745 WP_126531089.1 1795367..1796887(-) (comM) [Serratia rubidaea strain NCTC10036]
ATGTCATTGGCGGTTATTTTCACTCGGGCTACGCTGGGCGTTCAGGCGCCGTCGGTGACGGTCGAAGTCCATATCAGCAA
CGGGTTGCCCGGATTAACGCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGGCGCGCGATCGGGTACGCAGCGCACTGC
TCAACAACGGTTTTACCTTTCCCGCGAAACGCATCACCGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAGGGCGGCCGG
TACGATCTGCCGATCGCTCTGGCGATCCTCGCCGCTTCGGAGCAGATCCCGGCAGATCGGCTGGCCGAACACGAATTTCT
CGGCGAACTGGCGCTGTCCGGCGCATTGCGCGCCGTCAGCGGCGCCATTCCCGCAGCAATGGCGGCGCAACAGGATGGCA
GAGGGCTGATCCTGCCCGTAGAAAATGAAGGGGAAGTCGGCCTGCTGCCAAAAGAGGGAACGCGGGTTGCAACGCACCTG
TTAGCCGTCTGCGCCTTTCTGCTGGGCCAGGGTGAACTGTCGCTTGCCCAACCTCCCGCCGCGCCGCCTAACGCCAACCG
GGGGGACCTGCAGGATATTATCGGCCAGGAACAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCGGTCACAATCTGT
TGCTGCTCGGCCCGCCAGGCACCGGTAAAACCATGCTGGCAAGCCGCCTGCCGGGATTATTGCCGCCGCTAACCGACCAG
GAGGCGCTGGAGAGCGTTGCAGTCGCCAGCCTGCAGCATCAGCCCGCCGGCAGGCTGCCGTGGCGCCAGCGGCCATTCAG
GGCGCCGCACCACAGCGCATCCATGGCGGCACTGGTCGGCGGCGGCTCTCTGCCGCGTCCAGGGGAAATATCCATGGCGC
ACAATGGCGTGCTGTTCCTTGATGAACTCCCCGAATTTGAACGGCGCACGCTGGACGCCCTGCGCGAGCCTTTGGAATCC
GGGGAAATTGTCATTTCGCGCGCCAGTGCCAAAGTCTGCTTCCCGGCGCGAATTCAGCTGATCGCCGCCATGAATCCCAG
CCCGACCGGTCACTATCAGGGCATGCATAACCGAACCCCGCCACAGCAGGTTCTGCGCTATCTGGGCCGGCTTTCCGGGC
CGTTTCTCGACCGGTTCGATTTATCGATCGAAGTCCCCTTGCTGCCGCCCGGTACGCTCAGCAAACAGCAAGAGCCGGGA
GAAAGCAGCCAGCAGGTGCGTCAGCGCGTAATCGCGGCGCGGGAACGGCAATTGCAGCGCGCCGGAAAAATTAATGCCAT
TCTCGGCAAACGCGAAGTGGATCGAGATTGCCCATTGTGCGATGCCGACGCCCATTATCTGGAAACAACCTTGCTTAAGC
TGGGATTATCCGTACGCGCCTGGCATCGCATCCTCAAGGTAGCACGCACGCTGGCGGATTTAGCGGGAGAAAAACATATT
GCCCGCCACCATCTCAGCGAAGCATTAGGCTACCGTCGGATGGAACGCCTGCTGATCCAGCTACATCGCAGCCTGGAATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448S8L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.613

100

0.656
  comM Vibrio cholerae strain A1552

65.936

99.209

0.654
  comM Glaesserella parasuis strain SC1401

64.694

100

0.648
  comM Vibrio campbellii strain DS40M4

64.94

99.209

0.644
  comM Legionella pneumophila str. Paris

49.407

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.407

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.455

Multiple sequence alignment