Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL330_RS17995 Genome accession   NZ_LR134482
Coordinates   3802812..3804308 (+) Length   498 a.a.
NCBI ID   WP_101276112.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain NCTC10475     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3797812..3809308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL330_RS17965 (NCTC10475_03610) sutA 3798113..3798442 (-) 330 WP_003283413.1 transcriptional regulator SutA -
  EL330_RS17970 (NCTC10475_03611) - 3798521..3798946 (-) 426 WP_014821767.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EL330_RS17975 (NCTC10475_03612) - 3799049..3800299 (-) 1251 WP_014821768.1 ammonium transporter -
  EL330_RS17980 (NCTC10475_03613) - 3800423..3801739 (-) 1317 WP_041754605.1 ammonium transporter -
  EL330_RS17985 (NCTC10475_03614) glnK 3801778..3802116 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  EL330_RS17990 (NCTC10475_03615) - 3802515..3802775 (+) 261 WP_013981620.1 accessory factor UbiK family protein -
  EL330_RS17995 (NCTC10475_03616) comM 3802812..3804308 (+) 1497 WP_101276112.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL330_RS18000 (NCTC10475_03617) - 3804440..3806413 (+) 1974 WP_014821771.1 BCCT family transporter -
  EL330_RS18005 (NCTC10475_03618) - 3806453..3808090 (-) 1638 WP_023444605.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53101.86 Da        Isoelectric Point: 7.7340

>NTDB_id=1123077 EL330_RS17995 WP_101276112.1 3802812..3804308(+) (comM) [Stutzerimonas stutzeri strain NCTC10475]
MSLAIVHSRAQIGVEAPSVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPAERLDNLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGITPLEPYVAQGLLRQIQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIQSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNSCPCGYLGDPNGRCRCTPDQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAQARQLQLARQGCANAFLDLAGLRSHCQLGTEDQTWLERACERLALSLRAAHRLLKVARTLADLEQAER
ISRQHLAEALQYRPGSQG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1123077 EL330_RS17995 WP_101276112.1 3802812..3804308(+) (comM) [Stutzerimonas stutzeri strain NCTC10475]
ATGTCCCTGGCCATAGTTCATAGCCGCGCGCAGATTGGCGTCGAAGCGCCGTCGGTGACCGTCGAAGCTCATCTGGCCAA
CGGCCTGCCGGCACTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATTC
TCACCTCCGGCTTCGATTTTCCCGCTCGACGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCAAAGGACGGCGGCCGC
TTCGACCTGTCCATTGCCCTGGGCATCCTCGCCGCCAGCGGTCAGCTGCCGGCCGAGCGGCTCGACAACCTGGAATGCCT
CGGCGAACTGGCACTGTCCGGCGCCTTGCGCCCGGTCCAGGGAGTCCTGCCGGCTGCCCTCGCCGCTCGAGCGGCAGGGC
GCGCGCTGCTGGTGCCACGGGCCAACGCCGAGGAAGCCAGCCTGGCCTCGGGGCTCACCGTCTATGCCGCCGAGCACTTG
CTCGAGGTCGCTGCGCACTTCAACGGCATCACGCCGCTCGAACCCTATGTGGCCCAGGGCCTGCTACGACAGATTCAGCC
TTACCCCGACCTGGCCGACGTGCAAGGTCAGCAGGCGGCCAAGCGTGGGTTGCTGATCGCCGCGGCGGGCGCGCACAACC
TGCTGTTTTCCGGCCCGCCGGGCACCGGCAAGACACTCCTGGCCAGCCGCCTGCCCGGTCTCTTGCCGCCGCTGGACGAG
CAAGAGGCGCTGGAAGTCGCCGCCATCCAATCGGTGGCCAGTCACAGCCCTCTCGAGCATTGGCCGCAACGGCCCTTTCG
GCAGCCCCATCACAGTGCATCCGGCCCTGCGCTGGTCGGTGGCGGCAGCCGTCCGCAGCCGGGGGAGATCACCCTGGCGC
ATCAGGGCGTACTGTTTCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTCGAGGTCTTGCGTGAGCCACTGGAGTCG
GGGCATATCGTCATCGCCCGGGCCCGCGACAAGGTGCGTTTTCCGGCGCGCTTTCAGCTCGTGGCGGCGATGAACTCCTG
CCCCTGTGGCTACCTCGGTGATCCCAACGGGCGCTGCCGCTGCACCCCGGACCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAGGCGACGGCCCTCAACGCTCCGCCGCAGACG
GGCCAGAGCAGTGCCGTGCTCGCCGCCCAGGTAGCCCAGGCGCGGCAGCTGCAACTCGCCCGTCAGGGCTGCGCCAATGC
CTTCCTCGACCTCGCCGGATTGCGCAGCCATTGCCAGCTCGGCACCGAGGATCAGACCTGGCTGGAGCGCGCCTGCGAAC
GCCTGGCGCTGTCGCTGCGCGCAGCGCACCGCCTGCTCAAGGTGGCGCGCACCCTTGCCGATCTGGAACAGGCCGAGCGA
ATCAGCCGCCAGCACCTCGCCGAAGCCCTGCAGTACCGGCCCGGCAGTCAAGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.97

99.398

0.566
  comM Glaesserella parasuis strain SC1401

55.378

100

0.558
  comM Vibrio cholerae strain A1552

55.96

99.398

0.556
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Legionella pneumophila str. Paris

51.186

100

0.52
  comM Legionella pneumophila strain ERS1305867

51.186

100

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466

Multiple sequence alignment