Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL215_RS03845 Genome accession   NZ_LR134481
Coordinates   761631..763160 (-) Length   509 a.a.
NCBI ID   WP_126470293.1    Uniprot ID   A0A448PZM6
Organism   Haemophilus parainfluenzae strain NCTC10665     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 756631..768160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL215_RS03815 (NCTC10665_00752) - 757359..757871 (+) 513 WP_126470289.1 competence protein ComB -
  EL215_RS03820 (NCTC10665_00753) - 757868..758410 (+) 543 WP_126470291.1 competence protein ComC -
  EL215_RS03825 (NCTC10665_00754) - 758410..758793 (+) 384 WP_049357176.1 pilus assembly protein PilP -
  EL215_RS03830 (NCTC10665_00755) comE 758963..760180 (+) 1218 WP_420026300.1 type IV pilus secretin PilQ Machinery gene
  EL215_RS03835 (NCTC10665_00756) - 760200..760889 (+) 690 WP_126472006.1 ComF family protein -
  EL215_RS03840 (NCTC10665_00757) nfuA 761003..761587 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  EL215_RS03845 (NCTC10665_00758) comM 761631..763160 (-) 1530 WP_126470293.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL215_RS03850 (NCTC10665_00759) yihA 763291..763905 (-) 615 WP_126470295.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EL215_RS03855 (NCTC10665_00760) oppF 764187..765185 (-) 999 WP_014064663.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  EL215_RS03860 (NCTC10665_00761) - 765182..766153 (-) 972 WP_126470297.1 ABC transporter ATP-binding protein -
  EL215_RS03865 (NCTC10665_00762) oppC 766163..767098 (-) 936 WP_070868471.1 oligopeptide ABC transporter permease OppC -
  EL215_RS03870 (NCTC10665_00763) oppB 767108..768028 (-) 921 WP_049357190.1 oligopeptide ABC transporter permease OppB -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55750.12 Da        Isoelectric Point: 9.6294

>NTDB_id=1123038 EL215_RS03845 WP_126470293.1 761631..763160(-) (comM) [Haemophilus parainfluenzae strain NCTC10665]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALINAQFKYPAKRITVNLAPADLPKEGGQ
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGELRGVHGVIPAILAAQKAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESEVGFSAKNHLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGQTSQQVREKVLKVREMQLARAGKINAYLSSKEIERDCKLQDKDSLFLENALNKLGLSVRAYHRILKVSRTIADLN
GDKEIQQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1123038 EL215_RS03845 WP_126470293.1 761631..763160(-) (comM) [Haemophilus parainfluenzae strain NCTC10665]
ATGTCTCTTGCCATTGTTTATAGCCGTGCATCAATGGGTGTACAAGCCCCTCTTGTTACCATTGAGGTACACTTAAGTAA
CGGAAAGCCTGGATTTACCTTAGTTGGTCTACCTGAAAAAACCGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCATTAA
TAAATGCCCAGTTCAAATATCCTGCCAAACGTATCACCGTTAACCTTGCACCCGCCGATCTACCCAAAGAAGGGGGACAA
TTTGATTTACCCATTGCAATCGGTATTTTAGCTGCATCAGATCAACTTGATGGCAGCCGTTTAAAACAGTTTGAATTCGT
TGGTGAACTTGCATTAACGGGTGAATTACGCGGTGTACACGGTGTGATTCCTGCTATTTTAGCAGCACAAAAAGCGAAAC
GCGCCCCCATTATCGCTTATCAAAATGCCAATGAAGCTTCACTTGTCTCAGAGCAAGAGACTTATTTCGCTAAAAACCTG
TTAGAAGTTGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCCTCATTACTCGCACAAGAAAGTGAGGTCGGATT
TTCAGCTAAAAATCACTTAGATTTGACCGATATTATTGGTCAGCAACACGCTAAACGAGCACTGACAATAGCTGCCGCAG
GCCAGCACAACCTACTCTTTTTAGGGCCACCTGGGACGGGTAAAACCATGTTGGCAAGTCGTCTCACTGCATTGCTACCT
GAAATGACGGATTTAGAAGCGATTGAAACCGCTTCGGTTACGAGTTTAGTACAAAATGAATTAAATTTTCATAACTGGAA
ACAACGTCCGTTTCGAGCACCACATCATAGCGCCTCATTACCTGCCTTAGTAGGTGGAGGAACCATTCCCAAACCAGGCG
AAATATCGCTCGCACATAACGGCGTACTTTTTCTTGATGAATTGCCTGAGTTTGAGCGTAAAGTGCTTGATGCACTTCGC
CAGCCATTAGAAAGTGGAGAAATTATTATTTCACGTGCCAATGCAAAAATCCAATTCCCCGCTCGTTTTCAACTCGTTGC
CGCGATGAATCCAAGTCCAACCGGGCATTACACTGGAACACATAATCGCACCTCGCCACAGCAAGTGATGCGTTATTTAA
ACCGACTTTCGGGGCCATTTTTAGATCGCTTTGATTTATCTATTGAAGTACCGCTTCTGCCACAAGGCAGCTTACAGAAT
ACAGGAGATAGAGGTCAGACAAGCCAACAAGTACGAGAAAAAGTGTTAAAAGTGAGGGAAATGCAACTTGCTCGAGCCGG
TAAAATCAATGCGTATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATTCATTATTCCTTGAGA
ATGCACTGAACAAGCTTGGACTTTCAGTGAGAGCCTATCATCGGATTTTAAAAGTCTCACGCACAATTGCTGATTTAAAT
GGTGACAAAGAAATACAACAACCTCATTTAGCAGAAGCGCTAGGATATCGGGCGATGGATAGGTTGTTACAGAAATTATC
TGCCGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448PZM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.124

99.607

0.908
  comM Glaesserella parasuis strain SC1401

78.474

100

0.788
  comM Vibrio cholerae strain A1552

66.535

99.804

0.664
  comM Vibrio campbellii strain DS40M4

65.354

99.804

0.652
  comM Legionella pneumophila str. Paris

52.673

99.214

0.523
  comM Legionella pneumophila strain ERS1305867

52.673

99.214

0.523
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.184

100

0.477

Multiple sequence alignment