Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL203_RS10575 Genome accession   NZ_LR134383
Coordinates   2367535..2369043 (+) Length   502 a.a.
NCBI ID   WP_058472017.1    Uniprot ID   A0A0W0VEN5
Organism   Legionella jordanis strain NCTC11533     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2362535..2374043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL203_RS10535 (NCTC11533_02166) - 2362779..2363594 (-) 816 WP_058472025.1 aminotransferase class IV -
  EL203_RS10540 (NCTC11533_02167) - 2363601..2363795 (-) 195 WP_058472024.1 PA3496 family putative envelope integrity protein -
  EL203_RS10545 (NCTC11533_02168) - 2363997..2364572 (+) 576 WP_058472023.1 5-formyltetrahydrofolate cyclo-ligase -
  EL203_RS10550 (NCTC11533_02169) - 2364569..2365036 (+) 468 WP_058472022.1 EVE domain-containing protein -
  EL203_RS10555 (NCTC11533_02170) - 2365054..2365746 (+) 693 WP_058472021.1 hypothetical protein -
  EL203_RS10560 (NCTC11533_02171) - 2365731..2366738 (-) 1008 WP_162262757.1 capsular biosynthesis protein -
  EL203_RS10565 (NCTC11533_02172) - 2366777..2367115 (-) 339 WP_058472019.1 P-II family nitrogen regulator -
  EL203_RS10570 (NCTC11533_02173) ubiK 2367211..2367465 (+) 255 WP_058472018.1 ubiquinone biosynthesis accessory factor UbiK -
  EL203_RS10575 (NCTC11533_02174) comM 2367535..2369043 (+) 1509 WP_058472017.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL203_RS10580 (NCTC11533_02175) - 2369139..2371145 (+) 2007 WP_058472016.1 hypothetical protein -
  EL203_RS10585 (NCTC11533_02176) - 2371142..2371861 (-) 720 WP_058472015.1 SDR family oxidoreductase -
  EL203_RS10590 (NCTC11533_02177) - 2371896..2372795 (-) 900 WP_058472014.1 aspartate carbamoyltransferase catalytic subunit -
  EL203_RS10595 (NCTC11533_02178) ruvX 2372792..2373220 (-) 429 WP_058472013.1 Holliday junction resolvase RuvX -
  EL203_RS10600 (NCTC11533_02179) - 2373248..2373811 (-) 564 WP_058472012.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54718.27 Da        Isoelectric Point: 8.0892

>NTDB_id=1122562 EL203_RS10575 WP_058472017.1 2367535..2369043(+) (comM) [Legionella jordanis strain NCTC11533]
MNLAVSKTRSALGIYAQPVSVEVHLSNGLPGFTIVGLAEAAVKESKDRVRSAIINSQFEFPCRKIIVNLAPADLPKSGSG
FDLPIAIGILAASGQIPLQKLASHEFIAELALSGELRAVPAIIPIVLATCRDEQKLIISAANADEASLVGYAGVLSACTL
REVCSYLCQDSPLGKLSPRPSCQTHEEKLDWSDIKGQQHAKQAMEIAACGGHSVLLSGPPGSGKTMLAKRFSTLLPELND
VQALECAAINSIRGSRYDFKNWKRPPFRSPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFHKHVLETLRQPLE
SGSVSISRAAMQMEFPAQFQLIAAMNPCPCGQWGNSQANCICTPERINRYISKLSAPLLDRIDMHINVQALPQEELIKNN
GIPECLSPKIRDRVTHIREIQQTRQNCLNSQLHPKECELVCALGKEEELFLASALSRLKLSARSYHRLLKVARTIADMNN
EPNVNLKALQFAFSFKQNLTMP

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=1122562 EL203_RS10575 WP_058472017.1 2367535..2369043(+) (comM) [Legionella jordanis strain NCTC11533]
ATGAATCTCGCTGTGAGCAAGACGCGCAGTGCATTGGGTATTTATGCCCAACCTGTTTCTGTAGAAGTGCATTTGTCCAA
TGGCTTACCCGGCTTTACCATTGTTGGCCTTGCCGAAGCCGCGGTGAAAGAAAGCAAGGATCGCGTTCGCAGTGCCATCA
TTAACAGTCAGTTTGAATTTCCATGCCGCAAAATTATCGTCAATCTAGCCCCAGCTGATTTACCTAAATCAGGAAGCGGC
TTTGATTTACCGATCGCTATCGGCATATTGGCTGCCTCCGGCCAAATACCCCTGCAAAAATTAGCTTCACATGAGTTCAT
AGCCGAATTGGCTTTAAGTGGTGAATTAAGAGCAGTTCCGGCCATTATCCCCATTGTATTGGCGACGTGTCGAGACGAAC
AAAAACTCATCATTTCAGCAGCCAATGCCGATGAAGCCTCATTAGTGGGCTATGCTGGCGTTTTATCAGCTTGTACTTTG
CGCGAAGTCTGCAGCTATTTATGTCAAGACAGCCCCTTAGGGAAATTGTCCCCAAGACCCTCTTGCCAAACCCATGAGGA
AAAACTGGATTGGTCTGACATTAAAGGGCAACAGCATGCAAAACAAGCCATGGAGATCGCCGCCTGTGGTGGCCATAGCG
TTTTACTAAGCGGACCACCTGGCAGCGGTAAAACCATGCTGGCCAAGCGCTTCAGTACACTTCTGCCTGAGTTAAATGAT
GTCCAGGCTTTGGAATGTGCAGCCATAAACTCCATTCGCGGCAGCCGCTATGATTTTAAAAACTGGAAGCGCCCTCCTTT
TCGCTCCCCACATCATACTGCCTCCCCTGTAGCATTGGTTGGAGGAGGTAATCCACCGAAACCCGGGGAGATTTCTCTGG
CGCATCATGGCGTGCTATTTCTTGATGAATTACCCGAGTTTCACAAGCATGTTTTGGAAACATTAAGGCAACCATTGGAA
TCAGGGAGCGTTTCAATTTCCCGTGCGGCCATGCAGATGGAATTTCCCGCGCAATTTCAACTGATTGCCGCCATGAATCC
CTGCCCTTGTGGCCAGTGGGGTAATTCGCAAGCCAACTGCATATGCACACCGGAGCGAATTAATCGTTATATCTCCAAGT
TGTCCGCCCCTCTTCTTGATAGAATTGATATGCACATAAATGTGCAAGCACTCCCGCAGGAAGAACTGATTAAAAACAAT
GGGATTCCAGAATGTCTAAGCCCCAAAATTCGTGACCGTGTAACTCATATTCGCGAAATACAGCAAACGCGGCAAAACTG
TTTGAATTCGCAACTGCATCCCAAAGAATGCGAGCTGGTTTGCGCTCTTGGTAAAGAAGAAGAATTGTTTTTAGCCTCAG
CCTTAAGCCGGTTAAAATTATCGGCCCGAAGCTATCATCGCTTGTTAAAGGTAGCCAGGACAATAGCGGATATGAACAAT
GAACCAAACGTAAACCTTAAAGCTTTGCAGTTTGCATTCTCTTTTAAACAAAATTTAACCATGCCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0VEN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

72.908

100

0.729
  comM Legionella pneumophila strain ERS1305867

72.908

100

0.729
  comM Vibrio cholerae strain A1552

52.419

98.805

0.518
  comM Haemophilus influenzae Rd KW20

51.639

97.211

0.502
  comM Glaesserella parasuis strain SC1401

49.6

99.602

0.494
  comM Vibrio campbellii strain DS40M4

49.598

99.203

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.153

98.805

0.436

Multiple sequence alignment