Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL199_RS12295 Genome accession   NZ_LR134365
Coordinates   2572300..2572896 (+) Length   198 a.a.
NCBI ID   WP_004143520.1    Uniprot ID   C8NAM6
Organism   Cardiobacterium hominis strain NCTC10426     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2567300..2577896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL199_RS12265 (NCTC10426_02394) nth 2568808..2569440 (-) 633 WP_004143529.1 endonuclease III -
  EL199_RS12270 (NCTC10426_02395) - 2569474..2569719 (-) 246 WP_004143528.1 hypothetical protein -
  EL199_RS12275 (NCTC10426_02396) - 2569719..2570498 (-) 780 WP_004143526.1 TatD family hydrolase -
  EL199_RS12280 (NCTC10426_02397) - 2570498..2570686 (-) 189 WP_126316102.1 hypothetical protein -
  EL199_RS12285 (NCTC10426_02398) - 2570736..2571122 (+) 387 WP_004143522.1 hypothetical protein -
  EL199_RS12290 (NCTC10426_02399) - 2571115..2572260 (+) 1146 WP_004143521.1 MFS transporter -
  EL199_RS12295 (NCTC10426_02400) ssb 2572300..2572896 (+) 597 WP_004143520.1 single-stranded DNA-binding protein Machinery gene
  EL199_RS12300 (NCTC10426_02401) - 2572960..2573613 (+) 654 WP_004143519.1 HAD family hydrolase -
  EL199_RS12305 (NCTC10426_02402) - 2573828..2574697 (+) 870 WP_004143518.1 serine hydrolase -
  EL199_RS12310 (NCTC10426_02403) - 2574832..2575290 (+) 459 WP_004143516.1 DUF177 domain-containing protein -
  EL199_RS12315 (NCTC10426_02404) rpmF 2575268..2575471 (+) 204 WP_004143514.1 50S ribosomal protein L32 -
  EL199_RS12320 (NCTC10426_02405) plsX 2575486..2576532 (+) 1047 WP_004143513.1 phosphate acyltransferase PlsX -
  EL199_RS12325 (NCTC10426_02406) - 2576529..2577497 (+) 969 WP_004143499.1 beta-ketoacyl-ACP synthase III -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21474.20 Da        Isoelectric Point: 4.8336

>NTDB_id=1122325 EL199_RS12295 WP_004143520.1 2572300..2572896(+) (ssb) [Cardiobacterium hominis strain NCTC10426]
MAGVNKVILIGNLGNDPDMRYMPNGEPVANISIATSETWNDKNTGEKREKTEWHRVVAYRRTAEIIGQYTRKGSKLYVEG
RLQTRKWTDQSGQQRYTTEIVADNIQMLDSRGGGEGSFGGNGSGNYPGNRSNSGGYGQQGGGYDQDYGGSYDQDYGAPSG
GNRPQPSTPNKPVPPQNNTGGLGGPTLDQDNFDDDIPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1122325 EL199_RS12295 WP_004143520.1 2572300..2572896(+) (ssb) [Cardiobacterium hominis strain NCTC10426]
ATGGCAGGCGTCAACAAAGTCATACTCATCGGCAACTTGGGCAACGACCCGGACATGCGCTACATGCCCAACGGCGAACC
GGTGGCCAACATCTCCATCGCCACCAGTGAGACCTGGAACGACAAAAACACCGGCGAAAAACGCGAAAAAACCGAATGGC
ACCGCGTTGTCGCCTACCGCCGCACCGCCGAAATCATTGGCCAATACACGCGCAAAGGCAGCAAACTCTACGTCGAAGGC
CGCCTGCAAACCCGCAAATGGACCGACCAAAGCGGCCAACAGCGCTACACCACCGAAATCGTCGCCGACAACATCCAAAT
GCTGGACAGCCGCGGCGGCGGCGAAGGCAGCTTCGGCGGCAATGGCAGCGGCAACTACCCCGGCAACCGCAGCAACAGCG
GCGGCTATGGCCAGCAAGGAGGCGGTTACGACCAAGACTACGGCGGCAGCTACGACCAAGACTACGGCGCGCCAAGCGGC
GGCAACCGCCCACAACCGTCCACGCCGAACAAACCCGTGCCGCCACAAAACAACACCGGCGGCCTCGGCGGCCCAACCCT
CGATCAGGACAACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C8NAM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.863

100

0.586
  ssb Vibrio cholerae strain A1552

51.269

99.495

0.51
  ssb Neisseria meningitidis MC58

44.444

100

0.444
  ssb Neisseria gonorrhoeae MS11

43

100

0.434

Multiple sequence alignment