Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL199_RS00205 Genome accession   NZ_LR134365
Coordinates   57670..59166 (+) Length   498 a.a.
NCBI ID   WP_004142852.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain NCTC10426     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 52670..64166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL199_RS00185 (NCTC10426_00033) - 53835..54281 (+) 447 WP_004142862.1 ATP-binding protein -
  EL199_RS00190 (NCTC10426_00034) - 54271..55041 (+) 771 WP_004142860.1 tRNA(His) guanylyltransferase Thg1 family protein -
  EL199_RS00195 (NCTC10426_00035) - 55038..55703 (+) 666 WP_004142858.1 DNA alkylation repair protein -
  EL199_RS00200 (NCTC10426_00036) rtcR 55993..57594 (+) 1602 WP_004142854.1 RNA repair transcriptional activator RtcR -
  EL199_RS00205 (NCTC10426_00037) comM 57670..59166 (+) 1497 WP_004142852.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL199_RS00210 (NCTC10426_00038) recF 59163..60242 (+) 1080 WP_004142850.1 DNA replication/repair protein RecF -
  EL199_RS00215 (NCTC10426_00039) - 60256..61098 (+) 843 WP_004142847.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  EL199_RS00220 (NCTC10426_00040) - 61435..61917 (-) 483 WP_040356028.1 peroxiredoxin -
  EL199_RS00225 (NCTC10426_00041) - 62066..62506 (+) 441 WP_004142841.1 four-helix bundle copper-binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53240.66 Da        Isoelectric Point: 7.7284

>NTDB_id=1122309 EL199_RS00205 WP_004142852.1 57670..59166(+) (comM) [Cardiobacterium hominis strain NCTC10426]
MNLATTYTRAPLSMHAPLVRVEVHLASGLPAMTLVGLPEKAVKESKDRVRAAILNSGFEFPAKHITINLAPAELPKDGAR
YDLAIALGILAASGQIPPDATAAHEYHGELALSGQLRPVSGILPCALAATDARRDIITAPENHHEAALVAADNTHSAGSL
AEIAAILHGQRDWPAPPAAALRPPRQYPDYADVIGQHQAKRALLVAAAGGHHVLMSGPPGTGKSMLAQRFPGILPAMNDA
EAIESAAIRSLAGGGFNPADWRQRPYRAPHHSSSATALVGGGSIPKPGEISLAHHGVLFLDELPEFDRRVLEMLREPLEN
GHITISRAAMKSDFPARFQLIAAMNPCPCGYHGDPERACSDTPDQIARYRQKISGPLLDRIDIHLTVARLTPAQLRAQHS
PGETSAHLRAQSEAARAIQLRRQGGANAELSGRALNQHLHAEADVLPLLDRAAERMHLSMRSYQRILKVARTIADLADSS
TVSCAHLAEALQYRSDSA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1122309 EL199_RS00205 WP_004142852.1 57670..59166(+) (comM) [Cardiobacterium hominis strain NCTC10426]
ATGAACCTCGCCACCACCTACACCCGCGCCCCCCTGAGCATGCACGCGCCGCTGGTGCGGGTCGAAGTCCACCTTGCCAG
CGGCCTGCCGGCGATGACCCTCGTCGGCCTGCCGGAAAAAGCCGTCAAAGAAAGCAAAGACCGCGTTCGCGCCGCCATCT
TGAACAGCGGCTTCGAATTTCCGGCAAAACACATCACCATCAACCTCGCCCCGGCAGAACTGCCAAAAGACGGCGCGCGC
TACGACCTCGCCATCGCGCTCGGCATCCTCGCCGCTTCCGGACAAATCCCGCCAGACGCCACCGCCGCGCACGAATACCA
CGGCGAACTCGCCTTGAGCGGCCAACTGCGCCCGGTGAGCGGCATCCTGCCCTGCGCGCTCGCCGCTACAGACGCCCGCC
GCGACATCATCACCGCACCGGAAAACCACCACGAAGCCGCGCTGGTCGCCGCGGACAACACCCACAGCGCGGGCAGCCTC
GCCGAAATCGCCGCCATCCTGCACGGCCAGCGCGACTGGCCCGCGCCGCCCGCCGCCGCCCTGCGCCCACCACGCCAATA
CCCCGACTACGCCGACGTCATCGGCCAGCACCAGGCAAAACGCGCCCTGCTCGTCGCCGCCGCCGGTGGCCATCACGTGC
TGATGAGCGGCCCGCCCGGCACCGGTAAATCCATGCTGGCGCAGCGCTTCCCCGGTATCCTGCCCGCGATGAACGATGCA
GAGGCCATCGAAAGCGCCGCCATCCGCTCGCTTGCCGGAGGCGGCTTCAACCCCGCCGACTGGCGGCAGCGCCCCTACCG
CGCGCCACACCACAGCAGCTCCGCCACCGCGCTGGTTGGCGGCGGCTCCATCCCCAAACCGGGCGAAATCAGCCTTGCCC
ACCACGGCGTCCTCTTCCTCGACGAACTGCCCGAATTCGACCGCCGCGTCCTCGAAATGCTGCGCGAACCGCTGGAAAAC
GGCCACATCACCATCAGCCGCGCCGCGATGAAAAGCGACTTCCCCGCGCGCTTCCAACTCATCGCCGCCATGAACCCCTG
CCCCTGCGGCTACCACGGCGACCCCGAACGCGCCTGCAGCGACACCCCCGACCAAATCGCACGTTACCGCCAAAAAATCT
CCGGACCGCTGCTCGACCGCATCGACATCCACCTCACCGTCGCCCGCCTGACACCCGCACAACTGCGCGCGCAGCACAGC
CCCGGCGAAACCAGCGCCCACCTGCGCGCACAAAGCGAAGCGGCGCGCGCCATCCAGCTGCGCCGCCAGGGAGGCGCCAA
CGCCGAATTAAGCGGACGCGCGCTCAACCAACACCTGCACGCCGAAGCAGACGTCCTGCCACTACTTGACCGCGCCGCCG
AACGCATGCACCTCTCCATGCGCAGCTACCAGCGCATCCTCAAAGTCGCGCGCACCATCGCCGACCTCGCGGACAGCAGC
ACCGTCAGCTGCGCGCATCTCGCCGAAGCCCTGCAATACCGCAGCGACAGCGCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.2

100

0.524
  comM Vibrio campbellii strain DS40M4

51.904

100

0.52
  comM Haemophilus influenzae Rd KW20

51.098

100

0.514
  comM Glaesserella parasuis strain SC1401

50.398

100

0.508
  comM Legionella pneumophila str. Paris

50.198

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.446

Multiple sequence alignment