Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   EL140_RS03815 Genome accession   NZ_LR134336
Coordinates   751036..751992 (+) Length   318 a.a.
NCBI ID   WP_000495880.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746036..756992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS03800 (NCTC11427_00746) smpB 748291..748758 (+) 468 WP_001051742.1 SsrA-binding protein SmpB -
  EL140_RS03805 (NCTC11427_00747) tehB 748773..749633 (+) 861 WP_000413065.1 SAM-dependent methyltransferase TehB -
  EL140_RS03810 (NCTC11427_00748) - 749811..750959 (+) 1149 WP_000200351.1 hypothetical protein -
  EL140_RS03815 (NCTC11427_00749) coiA 751036..751992 (+) 957 WP_000495880.1 competence protein CoiA Machinery gene
  EL140_RS03820 (NCTC11427_00750) pepF 752011..753813 (+) 1803 WP_000244099.1 oligoendopeptidase F Regulator
  EL140_RS03825 (NCTC11427_00751) - 753815..754528 (+) 714 WP_000230403.1 O-methyltransferase -
  EL140_RS03830 (NCTC11427_00752) prsA 754596..755537 (+) 942 WP_000728082.1 peptidylprolyl isomerase PrsA -
  EL140_RS03835 (NCTC11427_00753) ftsW 755725..756948 (+) 1224 WP_000703344.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37803.29 Da        Isoelectric Point: 9.3646

>NTDB_id=1121845 EL140_RS03815 WP_000495880.1 751036..751992(+) (coiA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MFVARDAKGNLVNALEKDVTKQAYTCPACGGGLRLRQGQSIRTHFAHERLRDCMAIFENESPEHLGNKEALYHWAKKDSQ
VALEYSLPEIQQVADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDLKKQVLRLKYLLHQDLRGKLHFQVKEFPYGKGNLLEILRFPYQKQKLPRFAVVQDPTICHYIRQQLYYQTSYWM
KKQEEAYYQGDNLLNHQLDDWYPQVRPIESGDFLQIETDLTSYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1121845 EL140_RS03815 WP_000495880.1 751036..751992(+) (coiA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGTTTGTAGCCAGAGATGCCAAGGGGAATTTGGTGAATGCCCTTGAAAAAGATGTGACCAAGCAAGCCTATACTTGTCC
AGCCTGTGGGGGCGGACTACGATTACGTCAAGGACAGAGTATTCGAACGCACTTTGCCCATGAAAGGTTAAGAGATTGTA
TGGCCATTTTTGAAAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGCCCTTTATCACTGGGCCAAGAAGGACAGTCAG
GTCGCCTTAGAATATAGTCTGCCTGAGATTCAGCAGGTTGCGGATGTTCTTGTCAATGAGAAACTAGCTCTGGAGGTTCA
GTGCAGCCCCTTGTCTCAAAAGCTTTTAGGTGATAGAAGCCAAGGATACCGTAGCCAAGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGATTAACACAATTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGTTTC
TATGTTTGGGAACTGGATCTCAAAAAACAAGTTTTGAGACTCAAATATCTTTTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAAGAATTTCCCTATGGAAAAGGAAATCTCTTGGAAATCCTACGATTTCCTTATCAAAAACAAAAACTGC
CTCGTTTTGCAGTTGTGCAAGATCCCACTATCTGTCACTACATTCGCCAGCAGTTGTACTACCAAACGTCCTACTGGATG
AAGAAGCAGGAGGAAGCTTATTATCAAGGAGACAATCTATTAAACCATCAACTGGACGACTGGTATCCCCAGGTCAGACC
GATAGAGTCAGGTGATTTTTTGCAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

70.755

100

0.708
  coiA Streptococcus pneumoniae D39

70.755

100

0.708
  coiA Streptococcus pneumoniae R6

70.755

100

0.708
  coiA Streptococcus mitis NCTC 12261

70.755

100

0.708
  coiA Streptococcus pneumoniae TIGR4

70.44

100

0.704
  coiA Lactococcus lactis subsp. cremoris KW2

41.538

100

0.425

Multiple sequence alignment