Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL140_RS03820 Genome accession   NZ_LR134336
Coordinates   752011..753813 (+) Length   600 a.a.
NCBI ID   WP_000244099.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 747011..758813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS03800 (NCTC11427_00746) smpB 748291..748758 (+) 468 WP_001051742.1 SsrA-binding protein SmpB -
  EL140_RS03805 (NCTC11427_00747) tehB 748773..749633 (+) 861 WP_000413065.1 SAM-dependent methyltransferase TehB -
  EL140_RS03810 (NCTC11427_00748) - 749811..750959 (+) 1149 WP_000200351.1 hypothetical protein -
  EL140_RS03815 (NCTC11427_00749) coiA 751036..751992 (+) 957 WP_000495880.1 competence protein CoiA Machinery gene
  EL140_RS03820 (NCTC11427_00750) pepF 752011..753813 (+) 1803 WP_000244099.1 oligoendopeptidase F Regulator
  EL140_RS03825 (NCTC11427_00751) - 753815..754528 (+) 714 WP_000230403.1 O-methyltransferase -
  EL140_RS03830 (NCTC11427_00752) prsA 754596..755537 (+) 942 WP_000728082.1 peptidylprolyl isomerase PrsA -
  EL140_RS03835 (NCTC11427_00753) ftsW 755725..756948 (+) 1224 WP_000703344.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69823.73 Da        Isoelectric Point: 4.5986

>NTDB_id=1121846 EL140_RS03820 WP_000244099.1 752011..753813(+) (pepF) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTASQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGSASETFAILDNADISFPYVLDDEGNEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLRKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSPEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1121846 EL140_RS03820 WP_000244099.1 752011..753813(+) (pepF) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCAACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCATCTCAGTATGAGGGGCATCTCCTGGATAGCGCAGACAGTT
TGCTTGAGATTACAGAATTCTCACTTGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACACGTGAAGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAACAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGTTCTGCTAGTGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATACGTGCTTGATGA
CGAAGGCAATGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACATACGAGCAATTTCAACACACTTATGCTAAGACTTTGCAGACAAATGTTAAGGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTTGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGATAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTAGAACTTCGTTCTAAAATCTTGGGGA
TTTCCGACCTCAAGATGTACGATGTCTACACACCGCTTTCGTCAGTAGATTATAGCTTTACCTACGAAGAAGCCTTGAAA
AAGGCAGAAGAGGCCTTGGCGGTTTTAGGTGACGACTACTTGAGCCGTGTCAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTATGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTAGACAATCTTTTTACCCTTGTCCATGAGACAGGTCACAGTATGCACTCCAGCTATACTCGTGAAACC
CAACCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCCTCAACGACTAACGAAAATATCTTGACAGAGAA
ATTGTTGGAAGAAGTAGAAGACGATGCGACTCGTTTTGCAATTCTCAATAACTTCCTAGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCTATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAGCTCTACGCTGACTTGAACCAAGAGTACTATGGACTCAGAAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCGCGCATTCCACACTTCTACTATAACTACTATGTTTATCAGTATTCAACAGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAGTCCAGAAGATCGTGACCGCTATATCGACTATCTCAAAGCAGGTAAGTCAGACTATCCACTC
AATGTTATGAGAAAAGCGGGAGTGGATATGGAAAAAGAAGACTATCTCAACGACGCCTTTGCAGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.45

99.333

0.67

Multiple sequence alignment