Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | EL140_RS00865 | Genome accession | NZ_LR134336 |
| Coordinates | 156877..157830 (+) | Length | 317 a.a. |
| NCBI ID | WP_000345144.1 | Uniprot ID | - |
| Organism | Streptococcus oralis ATCC 35037 strain NCTC 11427 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 151877..162830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL140_RS00820 (NCTC11427_00157) | - | 152062..152427 (+) | 366 | WP_000286399.1 | DUF1033 family protein | - |
| EL140_RS00825 (NCTC11427_00158) | comGA/cglA/cilD | 152489..153430 (+) | 942 | WP_000249583.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL140_RS00830 (NCTC11427_00159) | comGB/cglB | 153378..154394 (+) | 1017 | WP_002875106.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EL140_RS00835 (NCTC11427_00160) | comGC/cglC | 154396..154719 (+) | 324 | WP_000735794.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL140_RS00840 (NCTC11427_00161) | comGD/cglD | 154682..155116 (+) | 435 | WP_001180060.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EL140_RS00845 (NCTC11427_00162) | comGE/cglE | 155079..155381 (+) | 303 | WP_000413369.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| EL140_RS00850 (NCTC11427_00163) | comGF/cglF | 155344..155805 (+) | 462 | WP_002875275.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| EL140_RS00855 (NCTC11427_00164) | comGG/cglG | 155783..156196 (+) | 414 | WP_000265647.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| EL140_RS00860 (NCTC11427_00165) | - | 156229..156816 (+) | 588 | WP_000679790.1 | class I SAM-dependent methyltransferase | - |
| EL140_RS00865 (NCTC11427_00166) | comYH | 156877..157830 (+) | 954 | WP_000345144.1 | class I SAM-dependent methyltransferase | Machinery gene |
| EL140_RS00870 (NCTC11427_00167) | - | 157882..159072 (+) | 1191 | WP_000167789.1 | acetate kinase | - |
| EL140_RS00875 (NCTC11427_00168) | rnpA | 159222..159593 (+) | 372 | WP_000748120.1 | ribonuclease P protein component | - |
| EL140_RS00880 (NCTC11427_00169) | - | 159568..160395 (+) | 828 | WP_000728097.1 | membrane protein insertase YidC | - |
| EL140_RS00885 (NCTC11427_00170) | jag | 160410..161396 (+) | 987 | WP_000242591.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| EL140_RS00890 (NCTC11427_00171) | - | 161452..162075 (+) | 624 | WP_000921432.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35472.48 Da Isoelectric Point: 4.2227
>NTDB_id=1121819 EL140_RS00865 WP_000345144.1 156877..157830(+) (comYH) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETNLEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDVISLLLVLVVEELLHKEEISILEIGSGMGILGATFLTSLAKKVDYLGVEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKGDKELEPFVYPLTSLQDQSVLLNFKENFQNWSKGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETNLEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDVISLLLVLVVEELLHKEEISILEIGSGMGILGATFLTSLAKKVDYLGVEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKGDKELEPFVYPLTSLQDQSVLLNFKENFQNWSKGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=1121819 EL140_RS00865 WP_000345144.1 156877..157830(+) (comYH) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTAGAGCAAAATAGTATCTATCTAGATGGCGAGACCAATCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAACGCCTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAACCTTTACAGGCCAATCACCAGTTTACACCGGATGTCATTTCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGCTTCA
TAAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGCATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAGTCGAAGTGGATGATTTGCTAATTGATCTGGCGGCTAGTATGGCAGATGTGATCGGTTTGCAG
GCAGGATTTGTCCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCTCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAGCAAGGTCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAGGAGATAAAGAACTAGAACCCTTTGTCTATCCTCTTACTA
GCTTGCAAGATCAGTCAGTTTTGTTGAACTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTAGAGCAAAATAGTATCTATCTAGATGGCGAGACCAATCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAACGCCTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAACCTTTACAGGCCAATCACCAGTTTACACCGGATGTCATTTCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGCTTCA
TAAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGCATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAGTCGAAGTGGATGATTTGCTAATTGATCTGGCGGCTAGTATGGCAGATGTGATCGGTTTGCAG
GCAGGATTTGTCCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCTCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAGCAAGGTCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAGGAGATAAAGAACTAGAACCCTTTGTCTATCCTCTTACTA
GCTTGCAAGATCAGTCAGTTTTGTTGAACTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
58.199 |
98.107 |
0.571 |
| comYH | Streptococcus mutans UA159 |
57.878 |
98.107 |
0.568 |