Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EL130_RS01760 Genome accession   NZ_LR134320
Coordinates   348633..349214 (-) Length   193 a.a.
NCBI ID   WP_002264115.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 343633..354214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS01750 (NCTC10832_00328) - 344069..347794 (-) 3726 WP_126475435.1 phosphoribosylformylglycinamidine synthase -
  EL130_RS01755 (NCTC10832_00329) purC 347804..348511 (-) 708 WP_002283937.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  EL130_RS01760 (NCTC10832_00330) comA 348633..349214 (-) 582 WP_002264115.1 ATP-binding cassette domain-containing protein Regulator
  EL130_RS01765 (NCTC10832_00331) - 349442..349690 (-) 249 WP_002263135.1 acyl carrier protein -
  EL130_RS01770 (NCTC10832_00332) plsX 349692..350690 (-) 999 WP_002283938.1 phosphate acyltransferase PlsX -
  EL130_RS01775 (NCTC10832_00333) recO 350898..351653 (-) 756 WP_002269787.1 DNA repair protein RecO -
  EL130_RS01780 (NCTC10832_00334) - 351643..352818 (-) 1176 WP_002277785.1 pyridoxal phosphate-dependent aminotransferase -
  EL130_RS01785 (NCTC10832_00335) - 352907..353875 (-) 969 WP_002277784.1 ribose-phosphate diphosphokinase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21345.29 Da        Isoelectric Point: 4.7600

>NTDB_id=1121403 EL130_RS01760 WP_002264115.1 348633..349214(-) (comA) [Streptococcus mutans strain NCTC10832]
MGKSGSGKTTLAKILAGYYTVSSGDSFLDGEKINYSQLRQLVTYVPQQSYVFTGTILDNLLLGAEEEVTDDRLMEVCSIA
EILDDIKAMPLGFQTQISEDGGLSGGQKQRLAIARALLTRQPVLIFDEATSGLDRDTEEKVIANLSKLDRTIIFIAHRGS
VSYYADRIVEIDSGEKIKDRINHRPFSFLMTTL

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1121403 EL130_RS01760 WP_002264115.1 348633..349214(-) (comA) [Streptococcus mutans strain NCTC10832]
ATGGGGAAAAGTGGTTCTGGAAAGACAACTTTGGCAAAAATTCTTGCAGGCTATTATACTGTTAGTAGCGGTGACTCTTT
CTTAGATGGAGAAAAGATAAATTATTCCCAGCTGCGCCAATTAGTAACTTATGTGCCACAGCAGTCTTATGTTTTTACAG
GAACAATCTTAGATAATCTGCTTCTTGGTGCTGAAGAGGAAGTAACGGATGATCGCTTAATGGAAGTTTGTTCAATTGCT
GAAATTTTAGACGATATCAAGGCAATGCCTTTAGGTTTTCAAACACAGATTTCAGAAGACGGCGGTTTATCTGGTGGTCA
AAAACAGCGTTTAGCTATTGCACGTGCTCTCTTAACCAGACAGCCTGTGTTGATTTTTGATGAGGCAACTAGTGGTTTAG
ATCGTGATACCGAAGAAAAAGTTATTGCCAATTTATCTAAATTGGATCGCACGATTATTTTTATTGCTCACCGAGGCAGT
GTTTCTTATTATGCTGATCGAATTGTTGAGATTGACTCTGGAGAGAAAATTAAGGATAGAATAAATCATCGTCCTTTCTC
ATTTTTGATGACGACTCTTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

51.872

96.891

0.503
  comA Streptococcus gordonii str. Challis substr. CH1

52.198

94.301

0.492
  comA/nlmT Streptococcus mutans UA159

49.468

97.409

0.482
  comA Streptococcus pneumoniae D39

50.273

94.819

0.477
  comA Streptococcus pneumoniae Rx1

50.273

94.819

0.477
  comA Streptococcus pneumoniae R6

50.273

94.819

0.477
  comA Streptococcus mitis SK321

49.18

94.819

0.466
  comA Streptococcus pneumoniae TIGR4

49.18

94.819

0.466

Multiple sequence alignment