Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL233_RS18150 Genome accession   NZ_LR134319
Coordinates   3858647..3860143 (+) Length   498 a.a.
NCBI ID   WP_013981619.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain NCTC10450     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3853647..3865143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL233_RS18120 (NCTC10450_03651) sutA 3853959..3854288 (-) 330 WP_011911739.1 transcriptional regulator SutA -
  EL233_RS18125 (NCTC10450_03652) - 3854366..3854791 (-) 426 WP_019405713.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EL233_RS18130 (NCTC10450_03653) - 3854893..3856143 (-) 1251 WP_045632863.1 ammonium transporter -
  EL233_RS18135 (NCTC10450_03654) - 3856260..3857576 (-) 1317 WP_011911736.1 ammonium transporter -
  EL233_RS18140 (NCTC10450_03655) glnK 3857615..3857953 (-) 339 WP_045632862.1 P-II family nitrogen regulator -
  EL233_RS18145 (NCTC10450_03656) - 3858350..3858610 (+) 261 WP_013981620.1 accessory factor UbiK family protein -
  EL233_RS18150 (NCTC10450_03657) comM 3858647..3860143 (+) 1497 WP_013981619.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL233_RS18155 (NCTC10450_03658) - 3860273..3862246 (+) 1974 WP_126526968.1 BCCT family transporter -
  EL233_RS18160 (NCTC10450_03659) - 3862277..3863914 (-) 1638 WP_126527226.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53145.02 Da        Isoelectric Point: 7.7464

>NTDB_id=1121371 EL233_RS18150 WP_013981619.1 3858647..3860143(+) (comM) [Stutzerimonas stutzeri strain NCTC10450]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPSERLEQLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVFAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLQHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAAPQT
GQSSAVLAAQVAEARRLQLARQGCANAFLDLTGLREHCQLTAEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
IGRQHLAEALQYRPGSQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1121371 EL233_RS18150 WP_013981619.1 3858647..3860143(+) (comM) [Stutzerimonas stutzeri strain NCTC10450]
ATGTCCCTGGCCATCGTCCATAGCCGCGCTCAGATCGGCGTCGAAGCCCCGGCGGTGACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCGGCGTTGACCCTGGTCGGCCTGCCGGAAACCGCCGTCAAGGAGAGCAAGGATCGCGTGCGCAGCGCCATCC
TGACCTCCGGTTTCGATTTCCCCGCCCGGCGCATCACGCTCAATCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGCCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTCGCCGCCAGCGGACAGCTGCCCAGCGAACGCCTGGAGCAGCTGGAATGCCT
GGGCGAACTGGCGTTGTCCGGTGCCTTGCGCCCGGTCCAGGGCGTGCTGCCTGCCGCCCTCGCCGCGCGTGCCGCCGGCC
GTGCGCTGCTGGTGCCGCGAGCCAATGCCGAGGAGGCCAGCCTCGCCTCGGGCCTGACCGTCTTTGCCGCCGAGCATCTG
CTGGAAGTTGCCGCCCACTTCAACGGCGTTACCCCGCTCGAGCCCTACGTGGCCCAGGGGCTGCTGCGGCAGGTCCAGCC
CTACCCCGACCTGGCCGACGTACAGGGCCAGCAGGCGGCCAAACGCGGCCTGCTTATCGCCGCGGCCGGCGCACACAACC
TGTTGTTCTCCGGGCCGCCCGGCACCGGCAAGACGCTATTGGCCAGCCGGCTGCCCGGCCTGCTGCCGCCGCTGGATGAG
CAGGAGGCGCTGGAAGTGGCCGCGATTCATTCGGTGGCCAGCCACAGCCCGCTGCAGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCCCATCACAGTGCATCGGGCCCGGCGCTGGTGGGTGGCGGCAGCCGGCCGCAACCGGGCGAGATCACCCTGGCGC
ATCAGGGTGTACTGTTTCTCGACGAGCTACCGGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTGGAATCG
GGCCATATCGTCATCGCCCGGGCGCGGGACAAGGTGCGTTTTCCGGCGCGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCGTGCGGCTATCTGGGCGACCCTAATGGTCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGACCGCTGCTCGACCGCATCGACCTGCATCTGACCGTGGCGCGCGAGGCCACCGCCCTCAACGCAGCGCCACAGACC
GGCCAGAGCAGCGCCGTGCTCGCCGCACAGGTGGCCGAGGCGCGGCGACTGCAACTCGCCCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGACCGGTCTGCGTGAGCACTGCCAGCTGACCGCCGAGGATCAGGCGTGGCTGGAGCGCGCCTGCGAGC
GTCTCGCACTGTCCCTGCGCGCCGCACACCGGTTGCTCAAGGTCGCACGCACCCTGGCCGACCTGGAGCAGGCCGAACGC
ATCGGCCGGCAACATCTGGCCGAAGCGCTGCAATATCGCCCCGGCAGCCAGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

55.976

100

0.564
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Legionella pneumophila str. Paris

50.988

100

0.518
  comM Legionella pneumophila strain ERS1305867

50.988

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466

Multiple sequence alignment