Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EL143_RS00425 Genome accession   NZ_LR134313
Coordinates   87637..89778 (-) Length   713 a.a.
NCBI ID   WP_085416770.1    Uniprot ID   A0A448D5B3
Organism   Neisseria canis strain NCTC10296     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 82637..94778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL143_RS00405 (NCTC10296_00088) lepA 82875..84668 (-) 1794 WP_085416776.1 translation elongation factor 4 -
  EL143_RS12805 - 84760..84882 (-) 123 WP_269471229.1 hypothetical protein -
  EL143_RS00410 (NCTC10296_00089) truB 85012..85926 (+) 915 WP_085416774.1 tRNA pseudouridine(55) synthase TruB -
  EL143_RS00415 (NCTC10296_00090) - 86218..86925 (+) 708 WP_085416772.1 phosphoglycolate phosphatase -
  EL143_RS00420 (NCTC10296_00091) recX 87143..87592 (+) 450 WP_085416771.1 recombination regulator RecX Regulator
  EL143_RS00425 (NCTC10296_00092) pilQ 87637..89778 (-) 2142 WP_085416770.1 type IV pilus secretin PilQ family protein Machinery gene
  EL143_RS00430 (NCTC10296_00093) pilP 89799..90335 (-) 537 WP_085416769.1 pilus assembly protein PilP Machinery gene
  EL143_RS00435 (NCTC10296_00094) - 90357..91004 (-) 648 WP_085416768.1 type 4a pilus biogenesis protein PilO -
  EL143_RS00440 (NCTC10296_00095) - 90991..91614 (-) 624 WP_085416767.1 PilN domain-containing protein -
  EL143_RS00445 (NCTC10296_00096) pilM 91616..92713 (-) 1098 WP_085416766.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 77795.88 Da        Isoelectric Point: 9.4555

>NTDB_id=1121081 EL143_RS00425 WP_085416770.1 87637..89778(-) (pilQ) [Neisseria canis strain NCTC10296]
MKPISMKTISAISLGLAMQASAFAGNITDINVSTLPSNQKIIKIKFDRDVVSPSGFVTNSPARIALDFPTTGLNLQQPVL
EYADPLLNQISAAKNGSQARVVLSLNKAGRYTSEIKGNEVWIYVNEAPEGSTASAQTVTNERVIVKKQEQAVSSASVDFR
KGSGNTGIVDVSAPSFSGNPTIKRQNDRVVITLKNHPLPAQAQRSLDVSDFNTPVRGIVLKRIGNDTEIVIRNKGGWDVR
EKVSGGHMSFEVFPKANVADSGLQNNKRNKNFTGRRVSFDFQDVEVRTILQILAKESGMNIVASDSVNGKMTLSLKDVPW
DQALDLVLEARNLDMRRQGNIINVAPRDELLAKDKATLQAQNEINDLGPLYSQTFQLKYKNVEEFRKVLRLEEGGSNNTA
NSILSKRGSALIDPGTNTLIITDNNTVIRKFQKLIEELDVPTRQVMVEARIVRASDGFSRDIGVKFGYAGSNGTNSWGNN
LNNAINNNNAYVENARARYNARNSDQAPALTPYSWDPNVNLPIAAATSSVALIHKMASGALSLELQAQQAQNKAKTISNP
RVLTQDRKEAVIESGTEIPYTSETSSGATDVEFKKAVLGLRVTPHITPDGQIIMDVKINKDSVNQSCGGSNGEPCIDTNN
LETRAMVEDGGTLVLGGIYEEVNSNGIRKVPLLGDIPVVGNLFKSRTRSEERSELLIFITPRIIDYQGSNLRY

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=1121081 EL143_RS00425 WP_085416770.1 87637..89778(-) (pilQ) [Neisseria canis strain NCTC10296]
ATGAAACCTATCAGTATGAAAACCATTTCAGCTATCAGCTTAGGCTTGGCTATGCAGGCTTCAGCTTTTGCAGGCAATAT
TACAGATATTAATGTATCAACTTTGCCGAGCAACCAAAAAATTATCAAAATTAAATTCGACCGTGATGTAGTGTCTCCCA
GTGGATTTGTAACTAACTCTCCGGCTAGAATTGCACTGGATTTTCCTACCACAGGTCTTAATTTGCAGCAGCCTGTGCTG
GAATATGCTGATCCTTTGTTGAATCAAATTAGTGCTGCTAAAAACGGCAGTCAGGCTCGGGTTGTGTTAAGTTTGAACAA
AGCAGGACGATATACTTCTGAAATCAAAGGAAACGAAGTATGGATTTATGTGAATGAAGCGCCGGAAGGTTCTACCGCAT
CTGCTCAAACTGTTACGAACGAGCGTGTGATTGTTAAAAAACAGGAGCAAGCAGTAAGTTCTGCATCAGTTGATTTCCGT
AAAGGAAGCGGTAATACAGGTATTGTCGATGTTAGTGCACCTTCGTTTAGTGGCAATCCGACTATTAAGCGCCAGAATGA
CCGCGTTGTGATTACATTGAAAAATCATCCATTGCCCGCACAAGCACAGCGTAGTTTGGATGTTTCTGATTTCAATACTC
CTGTGCGTGGTATAGTATTGAAGCGAATCGGTAATGATACTGAAATCGTTATCAGGAACAAAGGCGGCTGGGATGTTCGT
GAGAAAGTTTCAGGCGGACACATGTCTTTTGAAGTTTTCCCCAAAGCAAATGTTGCAGATTCGGGATTGCAGAATAATAA
AAGAAATAAAAACTTTACTGGCCGTAGAGTATCTTTTGATTTCCAAGACGTAGAAGTACGTACCATCTTGCAGATTTTGG
CTAAAGAGTCGGGCATGAATATCGTTGCCAGCGATAGCGTAAACGGCAAAATGACGCTTAGCTTAAAAGATGTACCGTGG
GATCAGGCACTAGATTTAGTGTTAGAAGCGCGTAACTTGGATATGCGCCGTCAAGGTAACATTATCAATGTTGCTCCGAG
AGATGAATTATTAGCCAAAGATAAAGCCACTTTGCAGGCTCAAAATGAAATTAACGATTTAGGGCCTTTATATTCCCAAA
CATTCCAACTCAAGTACAAAAACGTAGAAGAGTTCCGTAAAGTTTTGAGACTTGAAGAAGGCGGCAGCAACAATACTGCA
AACAGCATTTTAAGTAAACGCGGTAGCGCTTTAATTGATCCAGGCACCAACACGCTGATTATTACTGATAACAATACGGT
TATCCGGAAATTCCAAAAGCTTATAGAAGAGTTGGATGTTCCTACCCGCCAAGTAATGGTTGAGGCTCGTATTGTGCGTG
CCTCCGATGGATTCTCGCGCGATATTGGTGTGAAGTTTGGTTATGCCGGTTCAAATGGAACCAACAGCTGGGGAAATAAT
CTTAACAATGCCATTAACAACAACAATGCTTATGTTGAGAATGCACGAGCAAGATATAATGCACGTAATAGTGACCAAGC
TCCTGCACTTACGCCTTATTCATGGGATCCTAATGTTAACTTACCTATTGCTGCAGCTACTTCTAGTGTTGCATTAATCC
ATAAAATGGCATCTGGCGCATTGAGTTTGGAATTGCAAGCCCAGCAAGCTCAGAATAAGGCTAAAACCATTTCGAATCCG
CGAGTTTTAACTCAAGACAGAAAAGAAGCGGTAATTGAATCGGGTACTGAGATTCCTTATACTTCTGAAACATCCAGCGG
CGCGACTGATGTAGAGTTTAAAAAAGCTGTATTGGGCTTGCGTGTAACGCCGCATATTACGCCTGACGGTCAAATCATTA
TGGATGTGAAAATCAATAAAGATTCTGTAAACCAGAGCTGCGGTGGTAGCAACGGTGAGCCTTGTATTGATACCAATAAC
TTGGAAACACGCGCCATGGTTGAAGACGGCGGAACTTTGGTTCTCGGCGGCATTTATGAGGAAGTGAATTCCAATGGTAT
AAGAAAAGTACCTTTGTTGGGTGATATTCCGGTGGTTGGTAATCTGTTCAAATCGCGTACTCGTAGCGAAGAGCGCAGCG
AGCTGTTGATTTTTATCACTCCGCGCATCATCGATTATCAAGGCAGCAATTTGCGTTATTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-115)

Bacterial type II and III secretion system protein (Secretin)

(548-705)

Secretin and TonB N terminus short domain (STN)

(300-344)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448D5B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

52.571

100

0.574
  pilQ Neisseria gonorrhoeae strain FA1090

55.27

100

0.574
  pilQ Neisseria meningitidis MC58

58.053

79.243

0.46

Multiple sequence alignment