Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   EL143_RS00420 Genome accession   NZ_LR134313
Coordinates   87143..87592 (+) Length   149 a.a.
NCBI ID   WP_085416771.1    Uniprot ID   -
Organism   Neisseria canis strain NCTC10296     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 82143..92592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL143_RS00405 (NCTC10296_00088) lepA 82875..84668 (-) 1794 WP_085416776.1 translation elongation factor 4 -
  EL143_RS12805 - 84760..84882 (-) 123 WP_269471229.1 hypothetical protein -
  EL143_RS00410 (NCTC10296_00089) truB 85012..85926 (+) 915 WP_085416774.1 tRNA pseudouridine(55) synthase TruB -
  EL143_RS00415 (NCTC10296_00090) - 86218..86925 (+) 708 WP_085416772.1 phosphoglycolate phosphatase -
  EL143_RS00420 (NCTC10296_00091) recX 87143..87592 (+) 450 WP_085416771.1 recombination regulator RecX Regulator
  EL143_RS00425 (NCTC10296_00092) pilQ 87637..89778 (-) 2142 WP_085416770.1 type IV pilus secretin PilQ family protein Machinery gene
  EL143_RS00430 (NCTC10296_00093) pilP 89799..90335 (-) 537 WP_085416769.1 pilus assembly protein PilP Machinery gene
  EL143_RS00435 (NCTC10296_00094) - 90357..91004 (-) 648 WP_085416768.1 type 4a pilus biogenesis protein PilO -
  EL143_RS00440 (NCTC10296_00095) - 90991..91614 (-) 624 WP_085416767.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17438.92 Da        Isoelectric Point: 9.9427

>NTDB_id=1121080 EL143_RS00420 WP_085416771.1 87143..87592(+) (recX) [Neisseria canis strain NCTC10296]
MPPKSLRARALDILSRREISRAELKRKLAPYAESEAEVEKVLNEFAERNWQSDQRFTEAFVHCKSRKYGSRKLKQALLDK
GIDADTAQTFMPSETEELEAAQNVLLKKFKHPPTDLAEKHKYMRFLAYRGFDMDTINRAIKSAWNNEYK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1121080 EL143_RS00420 WP_085416771.1 87143..87592(+) (recX) [Neisseria canis strain NCTC10296]
ATGCCTCCGAAATCCCTACGCGCCCGCGCCCTTGATATCCTTTCACGCAGAGAAATCAGCCGTGCAGAGCTCAAGCGCAA
ACTTGCTCCGTATGCAGAAAGTGAAGCAGAAGTGGAAAAAGTGCTGAATGAGTTTGCCGAACGCAATTGGCAATCAGACC
AGCGCTTTACTGAAGCATTTGTTCACTGCAAAAGCCGCAAATATGGCTCACGCAAACTGAAGCAGGCGCTGTTAGACAAA
GGTATCGATGCAGACACTGCCCAAACTTTTATGCCGAGTGAAACAGAAGAATTAGAAGCCGCTCAAAATGTGCTGCTCAA
AAAATTCAAGCATCCTCCTACGGATTTAGCAGAAAAACATAAATATATGCGTTTTCTCGCTTACCGCGGCTTTGATATGG
ATACCATTAACCGTGCTATTAAATCAGCTTGGAATAACGAATACAAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(34-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

61.905

98.658

0.611

Multiple sequence alignment