Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL104_RS02645 Genome accession   NZ_LR134298
Coordinates   545858..547387 (-) Length   509 a.a.
NCBI ID   WP_074866885.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. gallicida strain NCTC10204     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 540858..552387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL104_RS02625 (NCTC10204_00533) - 542163..542846 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  EL104_RS02630 (NCTC10204_00534) envC 543029..544258 (+) 1230 WP_074866900.1 murein hydrolase activator EnvC -
  EL104_RS02635 (NCTC10204_00535) - 544255..545097 (+) 843 WP_074866889.1 divergent polysaccharide deacetylase family protein -
  EL104_RS02640 (NCTC10204_00536) - 545118..545804 (+) 687 WP_005757690.1 hypothetical protein -
  EL104_RS02645 (NCTC10204_00537) comM 545858..547387 (-) 1530 WP_074866885.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL104_RS02650 (NCTC10204_00538) yihA 547495..548112 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EL104_RS02655 (NCTC10204_00539) - 548223..549092 (+) 870 WP_010907199.1 VirK/YbjX family protein -
  EL104_RS02660 (NCTC10204_00540) trmL 549167..549643 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  EL104_RS02665 (NCTC10204_00541) - 549801..550127 (+) 327 WP_005725755.1 type II toxin-antitoxin system RelE/ParE family toxin -
  EL104_RS02670 (NCTC10204_00542) - 550207..550533 (+) 327 WP_005757699.1 HigA family addiction module antitoxin -
  EL104_RS02675 (NCTC10204_00543) - 550587..552107 (-) 1521 WP_059245887.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55972.44 Da        Isoelectric Point: 9.8013

>NTDB_id=1120688 EL104_RS02645 WP_074866885.1 545858..547387(-) (comM) [Pasteurella multocida subsp. gallicida strain NCTC10204]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVPQQDTYFAQHL
LEVVNFLNDHTSLPLASDLPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSARVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1120688 EL104_RS02645 WP_074866885.1 545858..547387(-) (comM) [Pasteurella multocida subsp. gallicida strain NCTC10204]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACGGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTCCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCTCGTTACCTTTAGCCTCAGACCTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTTCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACAGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACGAGTGAGGGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGCGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGATTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTACGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.086

100

0.841
  comM Glaesserella parasuis strain SC1401

77.515

99.607

0.772
  comM Vibrio cholerae strain A1552

66.012

100

0.66
  comM Vibrio campbellii strain DS40M4

65.748

99.804

0.656
  comM Legionella pneumophila str. Paris

52

98.232

0.511
  comM Legionella pneumophila strain ERS1305867

52

98.232

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47

Multiple sequence alignment