Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   EL096_RS08525 Genome accession   NZ_LR134294
Coordinates   1591248..1591910 (-) Length   220 a.a.
NCBI ID   WP_000649968.1    Uniprot ID   A0A098Z9B1
Organism   Streptococcus pneumoniae strain NCTC12977     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586248..1596910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL096_RS08500 (NCTC12977_01654) - 1586398..1586664 (-) 267 WP_001278167.1 Veg family protein -
  EL096_RS08505 (NCTC12977_01655) dnaB 1586666..1588018 (-) 1353 WP_000852486.1 replicative DNA helicase -
  EL096_RS08510 (NCTC12977_01656) rplI 1588062..1588514 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  EL096_RS08515 (NCTC12977_01657) - 1588511..1590484 (-) 1974 WP_000715124.1 DHH family phosphoesterase -
  EL096_RS08520 (NCTC12977_01658) hpf 1590620..1591168 (-) 549 WP_000599107.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EL096_RS08525 (NCTC12977_01659) comFC/cflB 1591248..1591910 (-) 663 WP_000649968.1 ComF family protein Machinery gene
  EL096_RS08530 (NCTC12977_01660) comFA/cflA 1591907..1593205 (-) 1299 WP_000867601.1 DEAD/DEAH box helicase Machinery gene
  EL096_RS08535 (NCTC12977_01661) - 1593261..1593896 (+) 636 WP_000395739.1 YigZ family protein -
  EL096_RS08540 (NCTC12977_01662) cysK 1594181..1595107 (+) 927 WP_050105695.1 cysteine synthase A -
  EL096_RS08545 (NCTC12977_01663) tsf 1595228..1596268 (-) 1041 WP_000808063.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25203.05 Da        Isoelectric Point: 7.7116

>NTDB_id=1120581 EL096_RS08525 WP_000649968.1 1591248..1591910(-) (comFC/cflB) [Streptococcus pneumoniae strain NCTC12977]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQFWCKEGVGVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1120581 EL096_RS08525 WP_000649968.1 1591248..1591910(-) (comFC/cflB) [Streptococcus pneumoniae strain NCTC12977]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGGAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z9B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909

Multiple sequence alignment