Detailed information NTG1120456

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: EL084_RS07180
• Genome accession: NZ_LR134292
• Coordinates: 1432649..1433086 (+)
• Length: 145 a.a.
• NCBI ID: WP_003067903.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC10389
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1427649..1438086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL084_RS07150 (NCTC10389_01515)	-	1429357..1429725 (+)	369	WP_126439865.1	DUF1033 family protein	-
EL084_RS07155 (NCTC10389_01516)	comYA	1429794..1430735 (+)	942	WP_126439866.1	competence type IV pilus ATPase ComGA	Machinery gene
EL084_RS07160	comGB	1430659..1431701 (+)	1043	Protein_1373	competence type IV pilus assembly protein ComGB	-
EL084_RS07165 (NCTC10389_01519)	comYC	1431701..1432003 (+)	303	WP_003067906.1	competence type IV pilus major pilin ComGC	Machinery gene
EL084_RS07170 (NCTC10389_01520)	comGD	1431978..1432418 (+)	441	WP_003067905.1	competence type IV pilus minor pilin ComGD	-
EL084_RS07175 (NCTC10389_01521)	comGE	1432372..1432665 (+)	294	WP_003067904.1	competence type IV pilus minor pilin ComGE	-
EL084_RS07180 (NCTC10389_01522)	comYF	1432649..1433086 (+)	438	WP_003067903.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL084_RS07185 (NCTC10389_01523)	comGG	1433097..1433408 (+)	312	WP_268921724.1	competence type IV pilus minor pilin ComGG	-
EL084_RS07190 (NCTC10389_01524)	comYH	1433462..1434418 (+)	957	WP_115254812.1	class I SAM-dependent methyltransferase	Machinery gene
EL084_RS07195 (NCTC10389_01525)	-	1434472..1435671 (+)	1200	WP_126439867.1	acetate kinase	-
EL084_RS07200 (NCTC10389_01526)	-	1435829..1436026 (+)	198	WP_126439868.1	helix-turn-helix transcriptional regulator	-
EL084_RS07210 (NCTC10389_01527)	-	1436545..1437180 (+)	636	WP_126439869.1	CPBP family intramembrane glutamic endopeptidase	-
EL084_RS07215 (NCTC10389_01528)	proC	1437231..1438001 (-)	771	WP_126439870.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16620.84 Da
• Isoelectric Point: 5.2435

>NTDB_id=1120456 EL084_RS07180 WP_003067903.1 1432649..1433086(+) (comYF) [Streptococcus equinus strain NCTC10389]
MLRRTRLKAFTLLESLVALLVISGTVLVYQGLTQSISQNVYYLSDNEENEWLLFSQQLRSELERCHLDCVSDNKLYVSKD
DKKLAYGLSKADDFRKTNASGQGYQPMLFGVNSSSIRQDGNNILIKLRMDNGMEREFVYTFDEAS

Nucleotide

• Length: 438 bp

>NTDB_id=1120456 EL084_RS07180 WP_003067903.1 1432649..1433086(+) (comYF) [Streptococcus equinus strain NCTC10389]
ATGTTAAGAAGAACTAGACTAAAGGCGTTTACGTTACTTGAAAGTTTGGTTGCTTTGCTGGTTATTTCAGGGACAGTTCT
GGTTTATCAAGGGCTAACGCAGTCAATTTCACAAAATGTTTATTACTTATCTGATAACGAAGAAAATGAGTGGCTTTTAT
TTTCTCAGCAGCTACGCTCAGAATTAGAACGATGCCACTTAGATTGTGTTTCTGACAATAAACTTTATGTTAGTAAGGAC
GATAAGAAATTAGCTTACGGGTTATCAAAAGCAGATGATTTTCGTAAAACAAATGCTTCTGGTCAAGGCTATCAGCCAAT
GTTATTTGGTGTTAATTCTTCTAGCATTCGTCAGGATGGTAATAATATTTTGATTAAGCTGCGAATGGATAATGGTATGG
AGAGAGAGTTTGTTTACACTTTTGATGAGGCAAGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (42-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	55.714	96.552	0.538
comYF	Streptococcus mutans UA159	55	96.552	0.531
comGF	Lactococcus lactis subsp. cremoris KW2	48.551	95.172	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae D39	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae R6	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae TIGR4	47.101	95.172	0.448
comGF/cglF	Streptococcus mitis NCTC 12261	45.324	95.862	0.434
comGF/cglF	Streptococcus mitis SK321	44.604	95.862	0.428