Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   EL092_RS10725 Genome accession   NZ_LR134291
Coordinates   2193324..2193476 (-) Length   50 a.a.
NCBI ID   WP_012131079.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7868     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 2188324..2198476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS10695 (NCTC7868_02137) pth 2189103..2189672 (-) 570 WP_012131076.1 aminoacyl-tRNA hydrolase -
  EL092_RS10700 (NCTC7868_02138) ychF 2189746..2190861 (-) 1116 WP_012131077.1 redox-regulated ATPase YchF -
  EL092_RS10715 (NCTC7868_02141) comE/comE2 2191183..2191950 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  EL092_RS10720 (NCTC7868_02142) comD/comD1 2191947..2193308 (-) 1362 WP_012131078.1 competence system sensor histidine kinase ComD Regulator
  EL092_RS10725 (NCTC7868_02143) comC/comC1 2193324..2193476 (-) 153 WP_012131079.1 bacteriocin Regulator
  EL092_RS10735 (NCTC7868_02145) rlmH 2193762..2194241 (-) 480 WP_012131080.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL092_RS10740 (NCTC7868_02146) htrA 2194435..2195628 (+) 1194 WP_012131081.1 S1C family serine protease Regulator
  EL092_RS10745 (NCTC7868_02147) spo0J 2195694..2196458 (+) 765 WP_012131082.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 6146.21 Da        Isoelectric Point: 10.8831

>NTDB_id=1120407 EL092_RS10725 WP_012131079.1 2193324..2193476(-) (comC/comC1) [Streptococcus gordonii strain NCTC7868]
MKKKNKQNLLPKELQQFEILTERKLEQVTGGDVRSNKIRLWWENIFFNKK

Nucleotide


Download         Length: 153 bp        

>NTDB_id=1120407 EL092_RS10725 WP_012131079.1 2193324..2193476(-) (comC/comC1) [Streptococcus gordonii strain NCTC7868]
ATGAAAAAGAAAAACAAACAAAATCTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGAAAGAAAATTAGAGCA
AGTTACTGGTGGAGATGTTCGCTCAAACAAAATTAGATTATGGTGGGAAAATATATTCTTTAATAAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus gordonii str. Challis substr. CH1

100

100

1
  comC/comC2 Streptococcus gordonii strain NCTC7865

74

100

0.74

Multiple sequence alignment