Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   EL092_RS10745 Genome accession   NZ_LR134291
Coordinates   2195694..2196458 (+) Length   254 a.a.
NCBI ID   WP_012131082.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7868     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2190694..2201458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS10715 (NCTC7868_02141) comE/comE2 2191183..2191950 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  EL092_RS10720 (NCTC7868_02142) comD/comD1 2191947..2193308 (-) 1362 WP_012131078.1 competence system sensor histidine kinase ComD Regulator
  EL092_RS10725 (NCTC7868_02143) comC/comC1 2193324..2193476 (-) 153 WP_012131079.1 bacteriocin Regulator
  EL092_RS10735 (NCTC7868_02145) rlmH 2193762..2194241 (-) 480 WP_012131080.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL092_RS10740 (NCTC7868_02146) htrA 2194435..2195628 (+) 1194 WP_012131081.1 S1C family serine protease Regulator
  EL092_RS10745 (NCTC7868_02147) spo0J 2195694..2196458 (+) 765 WP_012131082.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 254 a.a.        Molecular weight: 29310.99 Da        Isoelectric Point: 9.3146

>NTDB_id=1120409 EL092_RS10745 WP_012131082.1 2195694..2196458(+) (spo0J) [Streptococcus gordonii strain NCTC7868]
MENYQYILIKDIHTNPYQPRKDFSIEKLNELANSIKENGLIQPIIVRKSSIIGYELLAGERRFRAAKIAGLTEIPALVKS
LSDDEMMKQAIIENLQREDLNPIEEAESYQNLIYKGLTHDEIAQIMGKSRPYITNLVRLLQLPDFVLKAVKEGHISQAHA
RLLIKLKEKDQRKWLENIISSDISVRKLEKLLQTSPIKSKSENVQKIFIEEEEENLKKLLGVEVKISLSKKQTGKISISF
SNQEEYERIINSLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=1120409 EL092_RS10745 WP_012131082.1 2195694..2196458(+) (spo0J) [Streptococcus gordonii strain NCTC7868]
ATGGAAAATTATCAATATATTTTAATTAAAGATATTCACACCAATCCCTATCAACCAAGAAAAGATTTTTCAATAGAGAA
ATTAAACGAGTTAGCAAATTCTATTAAAGAAAACGGATTAATTCAGCCTATTATTGTTAGGAAATCATCTATCATTGGAT
ACGAACTTTTAGCTGGGGAAAGAAGATTTAGGGCAGCTAAAATAGCAGGTTTAACTGAAATTCCTGCCTTAGTAAAATCA
CTAAGCGATGATGAAATGATGAAGCAGGCTATTATTGAAAATCTTCAAAGAGAGGATCTCAATCCAATAGAAGAAGCTGA
ATCTTATCAGAATCTTATTTACAAGGGATTAACGCATGATGAAATCGCTCAAATCATGGGAAAATCGAGACCTTATATTA
CTAATCTTGTTCGCTTGCTACAGCTACCTGATTTTGTCTTAAAAGCTGTAAAAGAGGGTCATATTTCTCAAGCTCATGCT
CGGTTACTAATAAAACTCAAGGAAAAAGACCAGAGAAAATGGCTTGAAAATATTATTTCTTCAGATATTTCTGTTAGAAA
ATTAGAAAAATTATTACAGACTTCTCCTATTAAGTCCAAGTCTGAAAATGTCCAAAAAATTTTTATAGAGGAAGAAGAAG
AAAACCTAAAGAAATTATTGGGAGTCGAAGTAAAGATTAGTCTCTCTAAGAAACAAACTGGCAAAATCTCAATTTCTTTT
TCTAATCAGGAAGAATATGAAAGAATTATTAACAGTCTTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

53.937

100

0.539


Multiple sequence alignment