Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   EL100_RS00250 Genome accession   NZ_LR134285
Coordinates   53357..54307 (-) Length   316 a.a.
NCBI ID   WP_126404004.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48357..59307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS00230 (NCTC3168_00047) - 48978..49460 (-) 483 WP_125374277.1 LURP-one-related/scramblase family protein -
  EL100_RS00235 (NCTC3168_00048) - 49751..50692 (-) 942 WP_126404007.1 peptidylprolyl isomerase -
  EL100_RS00240 (NCTC3168_00049) - 50770..51483 (-) 714 WP_126404006.1 O-methyltransferase -
  EL100_RS00245 (NCTC3168_00050) pepF 51485..53287 (-) 1803 WP_126404005.1 oligoendopeptidase F Regulator
  EL100_RS00250 (NCTC3168_00051) coiA 53357..54307 (-) 951 WP_126404004.1 competence protein CoiA Machinery gene
  EL100_RS00255 (NCTC3168_00052) - 54618..55172 (-) 555 WP_126404003.1 hypothetical protein -
  EL100_RS00260 (NCTC3168_00053) - 55338..55889 (-) 552 WP_126404002.1 hypothetical protein -
  EL100_RS00265 (NCTC3168_00054) - 56355..57644 (-) 1290 WP_126404001.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EL100_RS00270 (NCTC3168_00055) - 57725..58888 (-) 1164 WP_126404000.1 MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 38029.95 Da        Isoelectric Point: 9.5519

>NTDB_id=1120136 EL100_RS00250 WP_126404004.1 53357..54307(-) (coiA) [Streptococcus australis strain NCTC3168]
MFIAADAKQQRWNCLEKVPMRRDGPFVCLLCGKEVRLKKGRVMRPHFAHVNLEACPFHHETESPEHLELKLELYRWAKQN
TQAEVESPLQVLQQIADVLLPDQKIALEVQCSSLSMERLKERSDAYRMHGYQVYWLLGKNLWLKKSLSALQEGFVYFSQN
RGFHLWELDLEQQEVRLHYLIHQDLRGRLHYRTQHFPFYGGSLLEVLRTPYAQQGLQRMTVPLDRQFKDYLRQQLYYRHP
KWMALQEQLYLKGKHLLDLDLESFYPLCRPLKSSRFIQIKGDWRSYYQNFMTYYLQTGMKATQTLYSPRFYQNWKA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1120136 EL100_RS00250 WP_126404004.1 53357..54307(-) (coiA) [Streptococcus australis strain NCTC3168]
ATGTTTATTGCGGCTGATGCAAAGCAACAGCGTTGGAATTGTTTGGAGAAGGTTCCGATGAGAAGAGATGGTCCCTTTGT
CTGTCTCCTTTGTGGAAAGGAAGTCCGCTTAAAGAAAGGGCGAGTGATGCGTCCTCATTTTGCCCACGTCAACCTAGAGG
CTTGTCCCTTCCATCATGAAACGGAGAGTCCAGAACATTTGGAGTTAAAGTTGGAGCTTTATCGATGGGCCAAACAAAAT
ACCCAAGCTGAAGTGGAAAGTCCTTTGCAGGTTCTCCAACAGATTGCGGATGTTCTCCTTCCAGATCAAAAGATTGCCTT
AGAAGTGCAATGTAGTTCCTTGTCTATGGAGCGTTTAAAAGAACGGAGCGATGCCTATCGCATGCATGGTTATCAAGTTT
ATTGGTTATTGGGGAAAAACTTATGGCTCAAGAAAAGCCTGTCAGCTCTGCAAGAAGGTTTTGTCTATTTTAGCCAAAAT
AGGGGCTTTCATCTCTGGGAGCTGGACCTAGAGCAGCAGGAAGTTCGGCTCCACTATTTGATCCATCAAGACTTGCGAGG
GCGTCTTCATTATCGGACTCAACATTTTCCTTTTTATGGAGGGAGCTTATTAGAAGTTTTGCGGACCCCTTATGCCCAAC
AAGGCTTGCAACGAATGACGGTCCCTCTAGACCGACAGTTTAAGGACTATCTTCGTCAGCAGTTGTATTACCGGCATCCT
AAGTGGATGGCCCTTCAGGAACAACTCTATCTGAAAGGAAAGCATCTTCTGGACTTAGACTTGGAATCCTTTTATCCCCT
TTGTCGGCCACTGAAGTCTTCGCGTTTTATCCAGATTAAGGGAGACTGGCGAAGCTATTACCAGAACTTTATGACCTATT
ATCTCCAAACCGGAATGAAAGCGACGCAGACTCTTTATTCGCCTCGTTTTTATCAGAACTGGAAAGCTTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(25-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

49.682

99.367

0.494
  coiA Streptococcus pneumoniae TIGR4

48.726

99.367

0.484
  coiA Streptococcus pneumoniae Rx1

48.408

99.367

0.481
  coiA Streptococcus pneumoniae D39

48.408

99.367

0.481
  coiA Streptococcus pneumoniae R6

48.408

99.367

0.481
  coiA Lactococcus lactis subsp. cremoris KW2

40.81

100

0.415

Multiple sequence alignment