Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL100_RS00245 Genome accession   NZ_LR134285
Coordinates   51485..53287 (-) Length   600 a.a.
NCBI ID   WP_126404005.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 46485..58287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS00230 (NCTC3168_00047) - 48978..49460 (-) 483 WP_125374277.1 LURP-one-related/scramblase family protein -
  EL100_RS00235 (NCTC3168_00048) - 49751..50692 (-) 942 WP_126404007.1 peptidylprolyl isomerase -
  EL100_RS00240 (NCTC3168_00049) - 50770..51483 (-) 714 WP_126404006.1 O-methyltransferase -
  EL100_RS00245 (NCTC3168_00050) pepF 51485..53287 (-) 1803 WP_126404005.1 oligoendopeptidase F Regulator
  EL100_RS00250 (NCTC3168_00051) coiA 53357..54307 (-) 951 WP_126404004.1 competence protein CoiA Machinery gene
  EL100_RS00255 (NCTC3168_00052) - 54618..55172 (-) 555 WP_126404003.1 hypothetical protein -
  EL100_RS00260 (NCTC3168_00053) - 55338..55889 (-) 552 WP_126404002.1 hypothetical protein -
  EL100_RS00265 (NCTC3168_00054) - 56355..57644 (-) 1290 WP_126404001.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69199.22 Da        Isoelectric Point: 4.5954

>NTDB_id=1120135 EL100_RS00245 WP_126404005.1 51485..53287(-) (pepF) [Streptococcus australis strain NCTC3168]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEATALAAAIKDAAHFAGSLLSSPANLLETTEVYLDLSRRLEKVYVYAHMKND
QDTRVAKYQEFQSKAMSLYSFLGETFAFYEPEFMEITEEQYANFLKEVPALEAYAHYFDKLLKTKEHVLSQKEEELLAGA
GEIFAAAGETFEILDNADIVFPMVKDDQGQEVQLTHGNYISLVESKDRQVRKEAYQALYGVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYDSLVEAVNKHLPLLQRYVKLRSKILGIEDLKMYDVYTPLSSTDYKFTYEEALA
KSEQALAVLGDDYLSRVKRAFTERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEQLLAEVEDDETRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLSKEDNSEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDKDKYIEYLKAGNSDYPL
NVIRKAGVDMEKEDYLHAAFEVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1120135 EL100_RS00245 WP_126404005.1 51485..53287(-) (pepF) [Streptococcus australis strain NCTC3168]
ATGGTAAAACAACGAAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACCATTTTTGCGACAGACCAAGCTTGGGA
GGAAGAAGCAACTGCTTTAGCTGCAGCCATTAAAGATGCTGCCCATTTTGCAGGTTCTCTATTGTCTTCTCCAGCTAACC
TATTAGAAACCACAGAAGTTTATTTGGACTTGAGCCGTCGTTTGGAGAAGGTCTATGTTTACGCCCATATGAAGAATGAC
CAGGATACACGCGTAGCCAAATACCAAGAATTCCAATCAAAAGCGATGTCTCTTTATAGCTTTTTAGGGGAAACTTTTGC
CTTCTACGAACCAGAATTTATGGAGATTACCGAAGAGCAATATGCCAACTTCTTGAAAGAAGTCCCTGCCTTAGAAGCTT
ATGCTCATTACTTTGACAAATTGCTCAAAACCAAAGAGCACGTTCTTTCCCAAAAGGAAGAAGAGTTACTAGCAGGAGCG
GGTGAAATCTTTGCTGCGGCAGGTGAAACCTTTGAGATTTTGGACAATGCCGATATCGTCTTCCCGATGGTGAAGGATGA
CCAAGGACAAGAAGTACAGTTGACCCATGGAAACTATATTTCTTTGGTAGAATCTAAGGATCGCCAAGTCCGTAAGGAAG
CTTACCAGGCCTTGTATGGTGTCTACGAACAGTACCAACATACCTATGCTAAGACCCTTCAGACCAACGTCAAGGTTCAC
AATTACAATGCCAAGGTTCGTAAATTCTCAAGCGCGCGTGAGGCAGCTCTTTCTGCTAACTTTATCCCAGAGAGCGTCTA
CGATAGTCTAGTAGAAGCAGTGAATAAGCACTTGCCTTTGTTGCAACGCTACGTGAAACTCCGCTCAAAAATCTTGGGAA
TTGAAGATTTGAAGATGTATGATGTCTACACACCATTATCTTCTACCGATTACAAGTTCACCTATGAAGAAGCCCTTGCC
AAGTCTGAGCAAGCTTTGGCGGTGCTTGGTGATGACTACCTATCCCGCGTGAAGCGCGCCTTCACTGAACGTTGGATCGA
TGTTCATGTCAACCAAGGAAAACGCTCAGGTGCCTATTCAGGTGGATCGTATGACACCAATGCCTTTATGTTGTTGAACT
GGCAAGATACATTGGATAATCTCTTCACCTTGGTGCATGAGACTGGTCACAGTATGCACTCCAGCTATACCCGTGAAACC
CAGCCTTATGTCTATGGGGACTATTCGATCTTCCTTGCTGAGATAGCTTCCACAACCAATGAAAATATCTTGACCGAGCA
ACTGTTAGCAGAAGTAGAAGATGATGAAACCCGTTTTGCTATTCTCAACCACTTCTTGGATGGTTTCCGTGGTACGGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAACATGCGATTCACAAGGCCGACCAAGAAGGACAGGTCTTGACCAGCGAATTC
TTGAATGAGCTCTATGCGGACTTGAATGAGAAATACTATGGTCTTTCTAAAGAAGACAATTCAGAAATCCAATACGAATG
GGCTCGCATTCCTCATTTCTACTATAACTACTATGTTTTCCAATATTCAACTGGTTTTGCAGCAGCCTCTGCCTTGGCTG
AGAAAATCGTTCATGGAACACAGGAAGATAAGGACAAATACATAGAATATTTGAAGGCTGGAAATTCGGATTATCCACTC
AACGTGATCCGCAAGGCGGGTGTCGATATGGAAAAAGAAGACTACCTCCATGCAGCCTTTGAAGTCTTTGAACGTCGTCT
CAATGAATTTGAGGCACTGGTTGAAAAATTAGGATTGGCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.295

99.333

0.688

Multiple sequence alignment