Detailed information NTG1119788

Bioinformatically predicted

Overview

• Name: comB
• Type: Regulator
• Locus tag: EL077_RS09880
• Genome accession: NZ_LR134273
• Coordinates: 535144..535611 (+)
• Length: 155 a.a.
• NCBI ID: WP_337660770.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain NCTC12091
• Function: transport of ComC (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	524611..541358	535144..535611	within	0

Gene organization within MGE regions

Location: 524611..541358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL077_RS02585 (NCTC12091_00521)	-	525858..526556 (+)	699	WP_021320460.1	YoaK family protein	-
EL077_RS02590 (NCTC12091_00522)	metG	526775..528778 (+)	2004	WP_126436423.1	methionine--tRNA ligase	-
EL077_RS02595 (NCTC12091_00523)	-	529096..530352 (-)	1257	WP_126436426.1	ISL3 family transposase	-
EL077_RS02600 (NCTC12091_00524)	-	530754..531647 (+)	894	WP_024273139.1	helix-turn-helix domain-containing protein	-
EL077_RS02605 (NCTC12091_00525)	-	531987..532127 (+)	141	WP_012515166.1	hypothetical protein	-
EL077_RS09870 (NCTC12091_00526)	-	532240..532398 (+)	159	WP_021320463.1	hypothetical protein	-
EL077_RS09875 (NCTC12091_00527)	-	532412..532558 (+)	147	WP_337660769.1	hypothetical protein	-
EL077_RS02610 (NCTC12091_00528)	-	532581..532748 (+)	168	WP_012515168.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
EL077_RS02615	comA	532975..535129 (+)	2155	Protein_486	peptide cleavage/export ABC transporter ComA	-
EL077_RS09880 (NCTC12091_00531)	comB	535144..535611 (+)	468	WP_337660770.1	hypothetical protein	Regulator
EL077_RS02620 (NCTC12091_00532)	-	535599..536510 (+)	912	WP_337660779.1	bacteriocin secretion accessory protein	-
EL077_RS02625 (NCTC12091_00533)	-	537019..537255 (+)	237	WP_024273149.1	hypothetical protein	-
EL077_RS02630 (NCTC12091_00534)	nrdF	537713..538726 (+)	1014	WP_012678369.1	class 1b ribonucleoside-diphosphate reductase subunit beta	-
EL077_RS02635 (NCTC12091_00535)	nrdI	538728..539138 (+)	411	WP_014622448.1	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	-
EL077_RS02640 (NCTC12091_00536)	nrdE	539184..541358 (+)	2175	WP_111689917.1	class 1b ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 155 a.a.
• Molecular weight: 17968.39 Da
• Isoelectric Point: 5.8829

>NTDB_id=1119788 EL077_RS09880 WP_337660770.1 535144..535611(+) (comB) [Streptococcus equi subsp. equi strain NCTC12091]
MNNNILESAEFYNRRYHNFSSRVILPTLLLFLFGVFFLAFAKKEISIISTATVEPNIILSNIQSTSNNTILTNNLKDNKY
VKFGDLLIKYDSRKEGIQQETYQTQLNNLQIQKEQLELLKASIEAGNSQFPEKDNYGYYQTFIDYLNQINTLSAM

Nucleotide

• Length: 468 bp

>NTDB_id=1119788 EL077_RS09880 WP_337660770.1 535144..535611(+) (comB) [Streptococcus equi subsp. equi strain NCTC12091]
ATGAATAACAATATATTAGAAAGTGCGGAATTTTATAACCGTCGTTACCACAACTTTTCTAGTCGTGTCATTCTACCTAC
TTTGCTGCTTTTCTTGTTTGGTGTTTTCTTCCTAGCATTTGCAAAGAAAGAAATTTCTATTATTTCAACTGCAACAGTTG
AACCAAATATAATTCTTTCCAATATTCAATCTACAAGTAATAATACAATATTAACCAATAATCTAAAAGATAATAAATAT
GTCAAATTTGGAGACTTATTGATAAAATATGATTCAAGAAAAGAAGGTATTCAACAAGAGACCTATCAAACTCAATTAAA
TAATTTACAAATCCAAAAAGAACAGTTAGAGCTATTAAAAGCAAGTATTGAAGCTGGAAACAGTCAATTTCCAGAAAAAG
ATAATTATGGATATTATCAAACATTTATTGACTACTTAAATCAGATAAACACCTTATCAGCAATGTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB	Streptococcus mitis SK321	55.195	99.355	0.548
comB	Streptococcus pneumoniae TIGR4	55.195	99.355	0.548
comB	Streptococcus pneumoniae Rx1	55.195	99.355	0.548
comB	Streptococcus pneumoniae D39	55.195	99.355	0.548
comB	Streptococcus pneumoniae R6	55.195	99.355	0.548
comB	Streptococcus mitis NCTC 12261	54.545	99.355	0.542
comB	Streptococcus gordonii str. Challis substr. CH1	50.649	99.355	0.503