Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   EL085_RS12510 Genome accession   NZ_LR134267
Coordinates   2097817..2098014 (-) Length   65 a.a.
NCBI ID   WP_197737723.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain NCTC5661     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2092817..2103014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL085_RS09790 (SAMEA3504576_02014) - 2092916..2094793 (-) 1878 WP_100006802.1 ABC-F family ATP-binding cassette domain-containing protein -
  EL085_RS09795 (SAMEA3504576_02015) - 2094905..2095720 (+) 816 WP_015728742.1 ZIP family metal transporter -
  EL085_RS09800 (SAMEA3504576_02016) - 2095877..2097838 (-) 1962 Protein_1916 peptide cleavage/export ABC transporter -
  EL085_RS12510 comA/nlmT 2097817..2098014 (-) 198 WP_197737723.1 cysteine peptidase family C39 domain-containing protein Regulator
  EL085_RS12515 (SAMEA3504576_02017) - 2097938..2098129 (-) 192 WP_197737724.1 cysteine peptidase family C39 domain-containing protein -
  EL085_RS09805 (SAMEA3504576_02018) - 2098504..2098812 (-) 309 WP_063284913.1 DUF3884 family protein -
  EL085_RS09810 (SAMEA3504576_02019) - 2098887..2100017 (-) 1131 WP_159306489.1 glycosyltransferase -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7458.87 Da        Isoelectric Point: 8.5703

>NTDB_id=1119629 EL085_RS12510 WP_197737723.1 2097817..2098014(-) (comA/nlmT) [Staphylococcus pseudintermedius strain NCTC5661]
MDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDLQYPFIVHVKKITIIFTIML

Nucleotide


Download         Length: 198 bp        

>NTDB_id=1119629 EL085_RS12510 WP_197737723.1 2097817..2098014(-) (comA/nlmT) [Staphylococcus pseudintermedius strain NCTC5661]
TTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTTTGGTTCAGGTAGCAGATAAGTT
AGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATTTACAGTATCCTTTTATCGTTCATG
TTAAAAAAATAACAATCATTTTCACTATTATGTTGTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(2-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

59.259

83.077

0.492
  comA Streptococcus mitis SK321

56.604

81.538

0.462
  comA Streptococcus mitis NCTC 12261

56.604

81.538

0.462
  comA Streptococcus pneumoniae TIGR4

56.604

81.538

0.462
  comA Streptococcus pneumoniae Rx1

56.604

81.538

0.462
  comA Streptococcus pneumoniae D39

56.604

81.538

0.462
  comA Streptococcus pneumoniae R6

56.604

81.538

0.462
  comA Streptococcus gordonii str. Challis substr. CH1

56.604

81.538

0.462

Multiple sequence alignment