Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   EL081_RS07170 Genome accession   NZ_LR134266
Coordinates   1366888..1367589 (-) Length   233 a.a.
NCBI ID   WP_048717457.1    Uniprot ID   A0A3R9MQW7
Organism   Streptococcus viridans strain NCTC3166     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1361888..1372589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS07150 (NCTC3166_01414) rnc 1363269..1363970 (-) 702 WP_126405060.1 ribonuclease III -
  EL081_RS07155 (NCTC3166_01415) - 1364129..1364491 (-) 363 WP_126405061.1 YbaN family protein -
  EL081_RS07160 (NCTC3166_01416) vicX 1364731..1365540 (-) 810 WP_125374345.1 MBL fold metallo-hydrolase Regulator
  EL081_RS07165 (NCTC3166_01417) micB 1365549..1366895 (-) 1347 WP_126404593.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL081_RS07170 (NCTC3166_01418) micA 1366888..1367589 (-) 702 WP_048717457.1 response regulator YycF Regulator
  EL081_RS07175 (NCTC3166_01419) - 1368169..1369218 (+) 1050 WP_126404595.1 DUF389 domain-containing protein -
  EL081_RS07180 (NCTC3166_01420) thrS 1369579..1371522 (-) 1944 WP_126404597.1 threonine--tRNA ligase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26615.54 Da        Isoelectric Point: 4.7260

>NTDB_id=1119582 EL081_RS07170 WP_048717457.1 1366888..1367589(-) (micA) [Streptococcus viridans strain NCTC3166]
MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDGLEVARTIRKTSNVPIIVLSA
KDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTELTVESQTESTSDSDIVIGDLKIIPDAFLAQKKGKELELTH
REFELLYHLATHVGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1119582 EL081_RS07170 WP_048717457.1 1366888..1367589(-) (micA) [Streptococcus viridans strain NCTC3166]
ATGAAGAAAATTCTTGTTGTAGATGATGAAAAGCCGATTTCGGATATTATAAAATTCAATATGGCCAAAGAAGGCTATGA
AGTCTTGACTGCCTTCGATGGAAAAGAAGCACTGGCTGTTTTTGAAGCTGAGAGCCCAGATATTTTGATCTTGGACCTCA
TGCTTCCTGAAATTGATGGTTTGGAAGTAGCACGTACCATTCGAAAGACCAGTAATGTGCCGATTATTGTCTTATCTGCA
AAAGATACAGAATTTGATAAGGTCATCGGTCTTGAAATTGGTGCGGATGACTATGTGACTAAGCCATTCTCAAATCGTGA
GCTTCAAGCTCGCGTAAAAGCTTTATTGCGTCGGACAGAACTAACGGTAGAATCACAGACAGAGTCTACATCAGATTCAG
ATATTGTGATTGGTGATTTGAAAATCATTCCGGATGCCTTCCTTGCTCAGAAAAAAGGCAAAGAGCTCGAGTTGACCCAT
CGCGAATTTGAGCTGCTCTATCACTTGGCAACCCATGTAGGCCAAGTCATGACCCGTGAGCATTTGCTGGAAACAGTCTG
GGGCTACGATTATTTTGGAGATGTTCGGACAGTGGACGTAACGATTCGACGTTTGCGTGAAAAAATCGAAGATATTCCAG
GCCGTCCGGAGTATATTTTAACGCGCCGCGGTGTCGGTTACTATATGAGAAACAATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9MQW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

80.687

100

0.807
  vicR Streptococcus mutans UA159

77.542

100

0.785
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.022

99.142

0.446
  covR Streptococcus salivarius strain HSISS4

41.048

98.283

0.403

Multiple sequence alignment