Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EL081_RS07160 Genome accession   NZ_LR134266
Coordinates   1364731..1365540 (-) Length   269 a.a.
NCBI ID   WP_125374345.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359731..1370540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS07145 (NCTC3166_01413) smc 1359733..1363278 (-) 3546 WP_126404591.1 chromosome segregation protein SMC -
  EL081_RS07150 (NCTC3166_01414) rnc 1363269..1363970 (-) 702 WP_126405060.1 ribonuclease III -
  EL081_RS07155 (NCTC3166_01415) - 1364129..1364491 (-) 363 WP_126405061.1 YbaN family protein -
  EL081_RS07160 (NCTC3166_01416) vicX 1364731..1365540 (-) 810 WP_125374345.1 MBL fold metallo-hydrolase Regulator
  EL081_RS07165 (NCTC3166_01417) micB 1365549..1366895 (-) 1347 WP_126404593.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL081_RS07170 (NCTC3166_01418) micA 1366888..1367589 (-) 702 WP_048717457.1 response regulator YycF Regulator
  EL081_RS07175 (NCTC3166_01419) - 1368169..1369218 (+) 1050 WP_126404595.1 DUF389 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29730.70 Da        Isoelectric Point: 5.7554

>NTDB_id=1119580 EL081_RS07160 WP_125374345.1 1364731..1365540(-) (vicX) [Streptococcus viridans strain NCTC3166]
MDEKGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGSKYLGKVDDSQKHLFEMGKTLTFGDLDVESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNKTKKIYLGHLSKENNIKELAHMTMVN
QLARADLAVGHDFEVLDTSPDTATPLVDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1119580 EL081_RS07160 WP_125374345.1 1364731..1365540(-) (vicX) [Streptococcus viridans strain NCTC3166]
ATGGATGAAAAAGGGTTTAAGTATAGTATTTTAGCTTCGGGTTCGAGTGGTAATTCATTTTACCTAGAGACACCTAAGAA
AAAAATTCTAGTAGATGCAGGCTTGTCCGGGAAGAAGATTACAGGTTTGCTTGCAGAAATTGATCGCAAACCCGAAGATC
TTGACGCTATTTTGATCACACATGAACATTCGGATCACATTCATGGCGTTGGTGTGCTAGCTCGTAAATACGGGATGGAC
CTATACGCCAATGAAGCTACATGGAAGGCCATGGAGGGAAGCAAGTACCTTGGGAAGGTCGATGACTCCCAGAAACATCT
TTTTGAAATGGGCAAGACCTTAACCTTCGGGGATTTGGATGTGGAAAGTTTTGGTGTCAGTCATGATGCTGCGGCTCCCC
AGTTCTATCGTTTCATGAAGGATGGGAAGAGTTTTGTCATGCTGACGGATACAGGTTATGTCAGTGATCGGATGGCAGGG
ATTGTTGAAAATGCAGATGGCTATTTGATCGAGTCCAACCACGATGTGGAAATCCTACGAGCTGGCTCTTATGCTTGGCG
ATTAAAGCAACGGATCTTATCCGATTTGGGTCACCTCTCTAATGAAGATGGTGCGGATGCCATGATTCGGACACTAGGCA
ATAAGACCAAAAAGATTTATCTGGGCCACTTATCGAAGGAAAACAATATCAAGGAATTGGCCCATATGACCATGGTCAAT
CAATTGGCTCGAGCAGATTTGGCAGTGGGTCATGATTTTGAAGTGTTGGATACATCTCCAGATACAGCGACTCCATTAGT
AGATATCTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781

Multiple sequence alignment