Detailed information NTG1118927

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: EL098_RS20870
• Genome accession: NZ_LR134201
• Coordinates: 4296659..4297189 (-)
• Length: 176 a.a.
• NCBI ID: WP_008455813.1
• Uniprot ID: -
• Organism: Cedecea lapagei strain NCTC11466
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4277719..4296521	4296659..4297189	flank	138

Gene organization within MGE regions

Location: 4277719..4297189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL098_RS20800 (NCTC11466_04269)	-	4277719..4278051 (-)	333	WP_126357918.1	carboxymuconolactone decarboxylase family protein	-
EL098_RS20805 (NCTC11466_04270)	-	4278155..4279015 (+)	861	WP_126357919.1	LysR substrate-binding domain-containing protein	-
EL098_RS20810 (NCTC11466_04271)	-	4279384..4280769 (+)	1386	WP_126357920.1	diaminobutyrate--2-oxoglutarate transaminase	-
EL098_RS20815 (NCTC11466_04272)	-	4280784..4282256 (+)	1473	WP_126357921.1	aspartate aminotransferase family protein	-
EL098_RS20820 (NCTC11466_04273)	-	4282417..4283649 (+)	1233	WP_197718529.1	MFS transporter	-
EL098_RS20825 (NCTC11466_04274)	-	4283588..4284133 (-)	546	WP_164716911.1	polymer-forming cytoskeletal protein	-
EL098_RS23620 (NCTC11466_04275)	-	4284864..4285769 (-)	906	WP_126357923.1	hypothetical protein	-
EL098_RS20835 (NCTC11466_04276)	-	4285754..4286869 (-)	1116	WP_126357924.1	type IV toxin-antitoxin system AbiEi family antitoxin	-
EL098_RS20840 (NCTC11466_04277)	-	4287113..4288315 (-)	1203	WP_126357925.1	hypothetical protein	-
EL098_RS20845 (NCTC11466_04278)	drt3b	4289265..4291307 (-)	2043	WP_126357926.1	antiviral reverse transcriptase Drt3b	-
EL098_RS20850 (NCTC11466_04279)	drt3a	4291300..4292649 (-)	1350	WP_126357927.1	antiviral reverse transcriptase Drt3a	-
EL098_RS20860 (NCTC11466_04280)	-	4293113..4294792 (-)	1680	WP_232012251.1	integrase	-
EL098_RS23625 (NCTC11466_04281)	-	4294828..4295145 (-)	318	WP_232012252.1	hypothetical protein	-
EL098_RS23630 (NCTC11466_04283)	-	4295138..4296500 (-)	1363	Protein_4077	hypothetical protein	-
EL098_RS20870 (NCTC11466_04284)	ssb	4296659..4297189 (-)	531	WP_008455813.1	single-stranded DNA-binding protein SSB1	Machinery gene

Sequence

Protein

• Length: 176 a.a.
• Molecular weight: 18745.74 Da
• Isoelectric Point: 5.2456

>NTDB_id=1118927 EL098_RS20870 WP_008455813.1 4296659..4297189(-) (ssb) [Cedecea lapagei strain NCTC11466]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide

• Length: 531 bp

>NTDB_id=1118927 EL098_RS20870 WP_008455813.1 4296659..4297189(-) (ssb) [Cedecea lapagei strain NCTC11466]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCCGTTGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTTGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCTCTGCAAACCCGCAAATGGACCGACCAGGCTGGCGTAGAAAAGTACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGTGCACCAGCAGGCGGCAACGGCGGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGAGCGCACCA
GCGCCGTCTAATGAACCGCCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	75	100	0.767
ssb	Glaesserella parasuis strain SC1401	57.297	100	0.602
ssb	Neisseria meningitidis MC58	47.753	100	0.483
ssb	Neisseria gonorrhoeae MS11	47.753	100	0.483
ssbA	Bacillus subtilis subsp. subtilis str. 168	38.333	100	0.392