Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL022_RS15840 Genome accession   NZ_LR134173
Coordinates   3687415..3688926 (+) Length   503 a.a.
NCBI ID   WP_028380976.1    Uniprot ID   -
Organism   Legionella cherrii strain NCTC11976     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3682415..3693926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL022_RS15810 (NCTC11976_03291) - 3683991..3684677 (+) 687 WP_028380982.1 TVP38/TMEM64 family protein -
  EL022_RS15815 (NCTC11976_03292) - 3684631..3685452 (-) 822 WP_028380981.1 aminotransferase class IV -
  EL022_RS15820 (NCTC11976_03293) - 3685522..3685719 (-) 198 WP_028380980.1 hypothetical protein -
  EL022_RS15825 (NCTC11976_03294) - 3685981..3686562 (+) 582 WP_028380979.1 5-formyltetrahydrofolate cyclo-ligase -
  EL022_RS15830 (NCTC11976_03295) - 3686559..3686900 (-) 342 WP_028380978.1 P-II family nitrogen regulator -
  EL022_RS15835 (NCTC11976_03296) - 3686963..3687223 (+) 261 WP_028380977.1 accessory factor UbiK family protein -
  EL022_RS15840 (NCTC11976_03297) comM 3687415..3688926 (+) 1512 WP_028380976.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL022_RS15845 (NCTC11976_03298) - 3689050..3690369 (-) 1320 WP_028380975.1 glycosyltransferase family 87 protein -
  EL022_RS15850 (NCTC11976_03299) - 3690524..3691420 (-) 897 WP_028380974.1 aspartate carbamoyltransferase catalytic subunit -
  EL022_RS15855 (NCTC11976_03300) ruvX 3691566..3691985 (-) 420 WP_028380973.1 Holliday junction resolvase RuvX -
  EL022_RS15860 (NCTC11976_03301) - 3691978..3692541 (-) 564 WP_028380972.1 YqgE/AlgH family protein -
  EL022_RS15865 (NCTC11976_03302) - 3692621..3693364 (-) 744 WP_028380971.1 type II/III secretion system protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54859.14 Da        Isoelectric Point: 8.1257

>NTDB_id=1118789 EL022_RS15840 WP_028380976.1 3687415..3688926(+) (comM) [Legionella cherrii strain NCTC11976]
MNLAFTKTRSTVGILAQPVSVEVHLSNGLPGFTIVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPADLPKTGSG
FDLPIALGILAASKQIPQNQLTDHEFIAELALSGELRGISAIIPAVLAANKEKSSLIIASANAHEASLTGYQNIYSANNL
REVCSYLCQGTSLQFLPPKPESCSMRYTDDWSDIKGQFHAKKAMEIAAYGGHSILLNGAPGSGKTMLARRFRTLLPPLSE
AEALECIAINSIRGKLPDFSEWCSPPFRTPHHTASPVSLVGGGNPPKPGEISLAHHGVLFLDELPEFDRQVLETLRQPLE
SGTICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNPQANCLCSPDRIKRYHAKISAPLLDRIDMHISVQALTQEELVTPN
SNPHKQSDLIREQVIKVRAIQLARQDCLNAYLGANTCEKICALGSEEHDFLRQSMLQLKLSARGYHRLLKVARTIADIHA
SSRVCLEHLQQALSFRHALRTPG

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1118789 EL022_RS15840 WP_028380976.1 3687415..3688926(+) (comM) [Legionella cherrii strain NCTC11976]
ATGAATCTTGCATTTACTAAAACACGTAGTACTGTGGGGATATTGGCACAACCGGTGTCAGTAGAAGTTCATTTATCGAA
TGGTTTGCCTGGTTTTACAATCGTAGGCCTTGCCGAAACCGCCGTGAAAGAAAGCAAGGATCGAGTCCGCTCTGCGATTA
TTAATAGCCAGTTTGAATTTCCCTGCCGAAAAATTACTGTCAATTTGGGGCCTGCTGATTTACCTAAAACAGGAAGTGGT
TTTGATTTACCAATCGCTCTTGGTATTCTTGCTGCTTCCAAGCAAATTCCTCAAAACCAATTAACCGACCATGAGTTTAT
AGCCGAACTTGCTTTGAGTGGCGAGCTTCGAGGCATTTCCGCTATTATTCCAGCTGTCTTAGCGGCAAACAAAGAAAAAA
GCTCACTGATTATCGCCAGTGCTAATGCACATGAAGCCTCCTTGACCGGATATCAAAACATCTATAGTGCAAATAACTTG
CGTGAAGTATGCAGCTACCTGTGTCAAGGAACTTCATTACAATTCCTCCCCCCTAAACCTGAATCATGCTCCATGCGCTA
TACAGACGATTGGTCTGATATTAAAGGTCAGTTTCATGCGAAAAAAGCAATGGAAATTGCCGCATATGGCGGACACAGTA
TTTTACTCAATGGTGCTCCTGGAAGCGGAAAAACCATGTTAGCCAGGCGATTCAGGACTCTATTGCCCCCCTTATCTGAA
GCAGAAGCCTTAGAATGTATCGCCATTAACTCCATACGCGGTAAATTACCTGATTTTAGTGAATGGTGCTCCCCACCTTT
TCGTACCCCCCATCATACTGCCTCCCCCGTATCTTTAGTTGGTGGGGGAAATCCCCCAAAACCAGGGGAAATATCTCTGG
CACATCATGGGGTCTTATTTTTGGATGAGTTACCTGAATTTGATCGACAAGTCCTAGAAACCTTAAGACAACCTCTGGAA
TCAGGAACAATATGCATTTCAAGAGCGGCAGCACAAATAGAATTTCCAGCGAAATTTCAGCTCATCGCAGCCATGAATCC
CTGCCCATGTGGACAATGGGGCAATCCTCAGGCGAACTGTTTGTGTAGCCCTGATCGCATCAAGCGATATCATGCCAAAA
TTTCAGCACCTTTACTGGATCGTATTGACATGCATATCTCCGTCCAGGCACTCACTCAAGAGGAATTAGTTACCCCGAAT
AGTAATCCTCATAAACAAAGTGATCTGATCCGAGAGCAGGTTATTAAAGTACGAGCCATACAGTTGGCGCGACAAGATTG
TCTTAATGCTTATTTAGGAGCAAATACATGTGAAAAAATTTGTGCATTAGGTTCTGAGGAACACGATTTTTTACGACAGT
CTATGCTGCAACTCAAACTGTCTGCCCGGGGATATCATCGTTTATTGAAAGTTGCTCGAACTATTGCTGACATACACGCA
AGCAGCCGGGTATGCTTAGAGCATTTACAACAAGCATTATCCTTCAGGCATGCATTACGCACTCCGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

78.088

99.801

0.779
  comM Legionella pneumophila strain ERS1305867

78.088

99.801

0.779
  comM Haemophilus influenzae Rd KW20

50.397

100

0.505
  comM Vibrio cholerae strain A1552

49.798

98.608

0.491
  comM Vibrio campbellii strain DS40M4

49.497

98.807

0.489
  comM Glaesserella parasuis strain SC1401

47.495

99.205

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.685

99.205

0.423

Multiple sequence alignment