Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ELZ62_RS04075 Genome accession   NZ_LR134168
Coordinates   784688..785194 (-) Length   168 a.a.
NCBI ID   WP_015701477.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11394     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 779688..790194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ62_RS04040 (NCTC11394_00802) raiA 779916..780239 (-) 324 WP_005653397.1 ribosome-associated translation inhibitor RaiA -
  ELZ62_RS04045 (NCTC11394_00803) bamC 780429..781058 (-) 630 WP_038439193.1 outer membrane protein assembly factor BamC -
  ELZ62_RS04050 (NCTC11394_00804) dapA 781169..782065 (-) 897 WP_061659718.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ELZ62_RS04055 (NCTC11394_00805) bcp 782166..782633 (+) 468 WP_015701479.1 thioredoxin-dependent thiol peroxidase -
  ELZ62_RS04060 (NCTC11394_00807) exbB 782802..783253 (+) 452 Protein_765 TonB-system energizer ExbB -
  ELZ62_RS04065 (NCTC11394_00808) exbD 783257..783700 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  ELZ62_RS04070 (NCTC11394_00809) - 783710..784510 (+) 801 WP_015701478.1 energy transducer TonB -
  ELZ62_RS04075 (NCTC11394_00810) ssb 784688..785194 (-) 507 WP_015701477.1 single-stranded DNA-binding protein Machinery gene
  ELZ62_RS04080 (NCTC11394_00811) uvrA 785349..788180 (+) 2832 WP_015701476.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18807.64 Da        Isoelectric Point: 5.2733

>NTDB_id=1118688 ELZ62_RS04075 WP_015701477.1 784688..785194(-) (ssb) [Haemophilus influenzae strain NCTC11394]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGFSNEMGSSPQPSYQARQTNNGGNYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1118688 ELZ62_RS04075 WP_015701477.1 784688..785194(-) (ssb) [Haemophilus influenzae strain NCTC11394]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGCCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTTCTCTAATGAGATGGGATCTTCACCACAACCTTCTTACCAAGCTCGTC
AAACTAATAATGGTGGTAATTATCAATCATCTCGTCCAGCGCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.306

100

0.744
  ssb Vibrio cholerae strain A1552

56.425

100

0.601
  ssb Neisseria meningitidis MC58

50.867

100

0.524
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.375

Multiple sequence alignment