Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ELZ61_RS02855 Genome accession   NZ_LR134167
Coordinates   583288..583659 (+) Length   123 a.a.
NCBI ID   WP_126371281.1    Uniprot ID   A0A3S4J8D8
Organism   Avibacterium volantium strain NCTC3438     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578288..588659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS02855 (NCTC3438_00580) comE1/comEA 583288..583659 (+) 372 WP_126371281.1 helix-hairpin-helix domain-containing protein Machinery gene
  ELZ61_RS02860 (NCTC3438_00581) rdgB 583810..584424 (+) 615 WP_126371283.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ELZ61_RS02865 (NCTC3438_00582) hemW 584424..585584 (+) 1161 WP_126371285.1 radical SAM family heme chaperone HemW -
  ELZ61_RS02870 (NCTC3438_00583) rpiA 585687..586346 (+) 660 WP_126371287.1 ribose-5-phosphate isomerase RpiA -
  ELZ61_RS02875 (NCTC3438_00584) serA 586368..587600 (+) 1233 WP_126371289.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13334.27 Da        Isoelectric Point: 7.0174

>NTDB_id=1118639 ELZ61_RS02855 WP_126371281.1 583288..583659(+) (comE1/comEA) [Avibacterium volantium strain NCTC3438]
MKIKTVLSSLLLSIGLLSSFSVVGQPQLNEKVSSSTAQVLTDTIKEESFIGEKLNINTATASDIQRSLVGIGAKKAEAIV
DYREKHGKFTAVEQLLEVQGIGKATLEKNRERIDPLSFSEDGK

Nucleotide


Download         Length: 372 bp        

>NTDB_id=1118639 ELZ61_RS02855 WP_126371281.1 583288..583659(+) (comE1/comEA) [Avibacterium volantium strain NCTC3438]
ATGAAAATTAAGACAGTTCTATCTTCTTTATTGTTATCTATAGGCTTGTTAAGTAGCTTTTCTGTTGTGGGTCAACCTCA
ACTAAATGAAAAAGTCAGTTCTAGTACCGCTCAAGTTTTGACGGATACAATCAAAGAGGAATCTTTTATTGGGGAAAAAT
TGAATATCAATACCGCTACAGCGAGCGATATTCAACGTTCGTTGGTTGGTATTGGTGCGAAAAAAGCTGAAGCAATTGTT
GATTATCGTGAAAAACACGGCAAATTTACCGCAGTAGAACAGCTGTTAGAGGTTCAAGGCATTGGGAAAGCAACATTAGA
AAAAAACAGAGAACGTATCGATCCTTTATCATTTAGTGAAGATGGCAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4J8D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

57.265

95.122

0.545
  comEA/comE1 Glaesserella parasuis strain SC1401

60.92

70.732

0.431
  comEA Vibrio cholerae C6706

41.593

91.87

0.382
  comEA Vibrio cholerae strain A1552

41.593

91.87

0.382

Multiple sequence alignment