Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ELZ61_RS02575 Genome accession   NZ_LR134167
Coordinates   523690..525225 (-) Length   511 a.a.
NCBI ID   WP_126371201.1    Uniprot ID   A0A3S4H4A5
Organism   Avibacterium volantium strain NCTC3438     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 518690..530225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS02550 (NCTC3438_00517) rplQ 519715..520104 (+) 390 WP_103854517.1 50S ribosomal protein L17 -
  ELZ61_RS02555 (NCTC3438_00518) ribB 520319..520960 (-) 642 WP_126371198.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  ELZ61_RS02560 (NCTC3438_00520) - 521317..521580 (+) 264 WP_103855384.1 accessory factor UbiK family protein -
  ELZ61_RS02565 (NCTC3438_00521) nadR 521659..522930 (+) 1272 WP_103854511.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ELZ61_RS02570 (NCTC3438_00522) - 522939..523625 (+) 687 WP_126371199.1 metallophosphoesterase -
  ELZ61_RS02575 (NCTC3438_00523) comM 523690..525225 (-) 1536 WP_126371201.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ELZ61_RS02580 (NCTC3438_00524) yihA 525433..526065 (-) 633 WP_126371203.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ELZ61_RS02585 (NCTC3438_00525) pssA 526246..527607 (-) 1362 WP_126371205.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ELZ61_RS02590 (NCTC3438_00526) - 527781..528827 (+) 1047 WP_126371207.1 TrmH family RNA methyltransferase -
  ELZ61_RS02595 (NCTC3438_00527) - 528832..529092 (-) 261 WP_017806339.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ELZ61_RS02600 (NCTC3438_00528) - 529166..529906 (+) 741 WP_126371209.1 ribonuclease -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56158.82 Da        Isoelectric Point: 9.9944

>NTDB_id=1118638 ELZ61_RS02575 WP_126371201.1 523690..525225(-) (comM) [Avibacterium volantium strain NCTC3438]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASEQVNPERLKQFELLGELALTGQLRGVHGIIPAILAAKKVRRCPIIARQNANEAALVADQKSYFAQNL
LEVVQFINEQEKLPLATDLTTQSAADFPFKNQADLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTGLLP
EMTEQEAIETASVTSLVQNELNFQNWKQRPFRAPHHSASLPALVGGGTIPRPGEISLSHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPAKFQLIAAMNPSPTGHYSGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGALQH
IENKGETSEQVRSKIIKVREIQFARAGKINAHLSSKEIERDCKISSEDGIFLENTLTQLGLSVRAYHRILKVARTIADLN
NEKQIQRPHLAEALSYRAMDRLLQKLSKNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1118638 ELZ61_RS02575 WP_126371201.1 523690..525225(-) (comM) [Avibacterium volantium strain NCTC3438]
ATGTCGTTAGCCATCGTTTATAGCCGTGCGTCAATGGGGGTGCAAGCGCCGCTGGTTACTATTGAAGTGCATTTAAGCAA
CGGGAAGCCGGGCTTTACCCTTGTGGGCTTGCCAGAAAAAACGGTGAAAGAGGCGCAAGATCGCGTGCGAAGTGCGTTGT
TGAATGCCAATTTTAAATACCCTGCCAAGCGGATTACGGTGAACCTTGCGCCTGCGGATTTACCTAAAGACGGCGGGCGT
TTTGATCTACCCATTGCCATTGGGATTTTAGCCGCTTCTGAACAAGTTAATCCTGAACGTTTAAAGCAATTTGAGCTACT
GGGTGAACTGGCTTTAACAGGTCAATTGCGCGGAGTTCACGGCATTATTCCAGCGATTTTAGCGGCTAAAAAAGTACGTC
GTTGCCCGATTATTGCCAGACAAAATGCCAATGAAGCGGCTTTAGTCGCTGATCAAAAAAGTTATTTCGCGCAGAATTTA
TTAGAGGTGGTGCAATTTATTAATGAACAAGAAAAACTACCCCTTGCCACGGATTTAACCACGCAAAGTGCGGCGGATTT
TCCCTTTAAAAACCAAGCAGATTTAACGGATATTATTGGTCAGCAACACGCTAAACGAGCCTTAACCATCGCCGCCGCAG
GACAACATAATTTATTGCTTTTAGGGCCACCTGGTACGGGAAAAACAATGCTGGCGAGCCGTTTAACGGGATTATTGCCA
GAAATGACCGAGCAAGAAGCCATAGAAACCGCCTCTGTAACTAGCCTTGTACAAAATGAGCTAAATTTTCAAAACTGGAA
ACAACGCCCATTTCGTGCGCCCCACCACAGTGCGTCTTTGCCTGCTTTGGTGGGTGGGGGGACGATCCCAAGACCAGGGG
AAATTTCTCTTTCGCATAATGGTGTATTGTTTTTAGATGAGCTACCAGAGTTTGATCGCAAGGTGCTAGATGCTTTGCGT
CAGCCGTTAGAAAGTGGTGAAATCATTATTTCACGCGCCAATGCGAAAATCTGTTTTCCAGCAAAATTTCAACTGATTGC
GGCAATGAACCCAAGCCCTACTGGGCATTACAGTGGTGTGCATAATCGCACTTCACCGCAACAAGTGATGCGCTATTTGA
ATCGTCTTTCAGGGCCATTTTTAGATCGCTTTGATTTATCCATTGAAGTTCCGCTTTTGCCTAAAGGTGCATTACAACAC
ATTGAGAATAAAGGGGAAACCAGCGAGCAAGTGCGGTCAAAAATTATTAAAGTTCGTGAAATTCAATTTGCACGCGCTGG
AAAAATCAACGCACATTTAAGTAGTAAAGAAATTGAGCGAGATTGCAAAATTAGCTCGGAAGATGGCATTTTTCTTGAAA
ATACACTCACTCAATTAGGGCTTTCTGTGCGTGCTTATCACCGTATTTTAAAAGTGGCTCGCACCATTGCAGATCTAAAT
AACGAAAAGCAAATCCAACGCCCTCATTTGGCCGAAGCACTTTCCTATCGGGCGATGGATCGGCTGTTGCAGAAACTTTC
AAAGAATTTAGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4H4A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

83.037

99.217

0.824
  comM Glaesserella parasuis strain SC1401

75.345

99.217

0.748
  comM Vibrio cholerae strain A1552

64.173

99.413

0.638
  comM Vibrio campbellii strain DS40M4

63.386

99.413

0.63
  comM Legionella pneumophila str. Paris

51.383

99.022

0.509
  comM Legionella pneumophila strain ERS1305867

51.383

99.022

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.525

100

0.472

Multiple sequence alignment