Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SERRSCBI_RS21245 Genome accession   NZ_CP003424
Coordinates   4560838..4561368 (-) Length   176 a.a.
NCBI ID   WP_042785458.1    Uniprot ID   -
Organism   Serratia sp. SCBI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4555838..4566368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SERRSCBI_RS21210 (SERRSCBI_21245) - 4556174..4556581 (-) 408 WP_015379207.1 VOC family protein -
  SERRSCBI_RS21215 (SERRSCBI_21250) - 4556629..4557297 (-) 669 WP_042785455.1 glutathione S-transferase family protein -
  SERRSCBI_RS21220 (SERRSCBI_21255) - 4557294..4557737 (-) 444 WP_033644432.1 lipocalin-like domain-containing protein -
  SERRSCBI_RS21225 (SERRSCBI_21260) - 4557934..4558194 (+) 261 WP_042785456.1 YdgH/BhsA/McbA-like domain containing protein -
  SERRSCBI_RS21230 (SERRSCBI_21265) - 4558345..4559094 (+) 750 WP_042785457.1 3-oxoacyl-ACP reductase family protein -
  SERRSCBI_RS21235 (SERRSCBI_21270) - 4559358..4559570 (+) 213 WP_033644427.1 DUF1471 domain-containing protein -
  SERRSCBI_RS21240 (SERRSCBI_21275) - 4559796..4560752 (+) 957 WP_033651224.1 cyclase family protein -
  SERRSCBI_RS21245 (SERRSCBI_21280) ssb 4560838..4561368 (-) 531 WP_042785458.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SERRSCBI_RS21250 (SERRSCBI_21285) uvrA 4561646..4564474 (+) 2829 WP_033644422.1 excinuclease ABC subunit UvrA -
  SERRSCBI_RS21255 (SERRSCBI_21290) - 4564803..4565609 (+) 807 WP_042785801.1 MipA/OmpV family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18838.74 Da        Isoelectric Point: 5.2358

>NTDB_id=111787 SERRSCBI_RS21245 WP_042785458.1 4560838..4561368(-) (ssb) [Serratia sp. SCBI]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGSQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=111787 SERRSCBI_RS21245 WP_042785458.1 4560838..4561368(-) (ssb) [Serratia sp. SCBI]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAAGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCTGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAACAGCCACAGGGCGGCAACCAGTTCAGCGGCAGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

58.602

100

0.619
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment