Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ASU1_RS05775 Genome accession   NZ_CP009159
Coordinates   1268320..1269324 (-) Length   334 a.a.
NCBI ID   WP_005600359.1    Uniprot ID   A3MZ06
Organism   Actinobacillus suis ATCC 33415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1263320..1274324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU1_RS05760 (ASU1_05715) - 1264696..1266294 (-) 1599 WP_014991845.1 dipeptide ABC transporter ATP-binding protein -
  ASU1_RS05765 (ASU1_05720) oppC 1266310..1267224 (-) 915 WP_014991846.1 oligopeptide ABC transporter permease OppC -
  ASU1_RS05770 (ASU1_05725) oppB 1267234..1268157 (-) 924 WP_014991847.1 oligopeptide ABC transporter permease OppB -
  ASU1_RS05775 (ASU1_05730) ruvB 1268320..1269324 (-) 1005 WP_005600359.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ASU1_RS05780 (ASU1_05735) ruvA 1269343..1269948 (-) 606 WP_014991848.1 Holliday junction branch migration protein RuvA Machinery gene
  ASU1_RS05785 (ASU1_05740) potC 1270090..1270857 (-) 768 WP_014991849.1 spermidine/putrescine ABC transporter permease PotC -
  ASU1_RS05790 (ASU1_05745) potB 1270857..1271723 (-) 867 WP_014991850.1 spermidine/putrescine ABC transporter permease PotB -
  ASU1_RS05795 (ASU1_05750) potA 1271710..1272825 (-) 1116 WP_014991851.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  ASU1_RS05800 (ASU1_05755) nadS 1273143..1273439 (-) 297 WP_014991852.1 NadS family protein -
  ASU1_RS05805 (ASU1_05760) - 1273444..1273788 (-) 345 WP_014991853.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36929.33 Da        Isoelectric Point: 4.7294

>NTDB_id=111670 ASU1_RS05775 WP_005600359.1 1268320..1269324(-) (ruvB) [Actinobacillus suis ATCC 33415]
MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG
VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYAHLGIAKLD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=111670 ASU1_RS05775 WP_005600359.1 1268320..1269324(-) (ruvB) [Actinobacillus suis ATCC 33415]
ATGATTGAAGCAGATAGAATAATTAGTGCCTCACCGAAGCGTGAGGAAGAAGTCATCGATCGTGCAATTCGTCCTAAATT
ATTGGCGGATTATGTCGGTCAGCCGTCTGTACGAGAGCAGATGGAGATCTTTATTAAAGCGGCAAAATTGCGTGATGAGG
CGTTAGATCACTTATTGATTTTTGGCCCACCGGGATTGGGTAAAACTACCTTAGCCAATATTGTTGCCAATGAGATGGGC
GTGAATATCCGCACAACTTCCGGACCAGTACTGGAGAAAGCGGGCGATCTAGCGGCAATGTTGACCAATTTAGAGCCTTA
TGACGTATTATTTATTGATGAGATCCACCGCTTATCACCAGCAATTGAAGAAGTGCTTTATCCGGCGATGGAAGATTATC
AGCTGGATATTATGATTGGCGAAGGGCCGGCGGCACGTTCAATTAAACTGGATTTACCGCCGTTTACCTTAGTAGGAGCA
ACCACCCGTGCCGGTTCACTGACTTCTCCGTTACGTGACCGCTTTGGTATTGTACAGCGTTTAGAGTTTTACTCGGTGGA
TGATTTAACCTCGATCGTAAAACGTAGTGCCGATTGCTTAAACTTAAATTTATCGCCGGATGGTGCTTATGAAGTGGCTC
GCCGCTCACGAGGTACACCACGTATTGCCAACCGTTTATTACGCCGTGTGCGAGATTATGCCGATGTACGTAATAACGGT
GTGATTACCTCTGATATTGCTAAACAAGCGTTGGCGATGCTTGATGTGGATTCCGAAGGCTTTGACTTTATGGACATCAA
GTTACTGCAAGCGATTGTGGAACGTTTTGACGGAGGCCCGGTCGGCTTAGATAACTTAGCCGCAGCGATAGGCGAAGAGC
GAGATACGATTGAAGACGTACTTGAGCCTTATTTGATTCAGCAAGGTTTTTTACAACGAACGCCGCGAGGACGTATCGCT
ACCAGCCGAACTTATGCGCATTTAGGTATCGCTAAGCTTGATTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3MZ06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.346

97.006

0.605
  ruvB Streptococcus pneumoniae TIGR4

59.259

97.006

0.575
  ruvB Streptococcus pneumoniae R6

59.259

97.006

0.575
  ruvB Streptococcus pneumoniae D39

59.259

97.006

0.575
  ruvB Synechocystis sp. PCC 6803

54.969

96.407

0.53
  ruvB Helicobacter pylori 26695

54.952

93.713

0.515