Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ASU1_RS05780 Genome accession   NZ_CP009159
Coordinates   1269343..1269948 (-) Length   201 a.a.
NCBI ID   WP_014991848.1    Uniprot ID   A0ABT1WT29
Organism   Actinobacillus suis ATCC 33415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264343..1274948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU1_RS05760 (ASU1_05715) - 1264696..1266294 (-) 1599 WP_014991845.1 dipeptide ABC transporter ATP-binding protein -
  ASU1_RS05765 (ASU1_05720) oppC 1266310..1267224 (-) 915 WP_014991846.1 oligopeptide ABC transporter permease OppC -
  ASU1_RS05770 (ASU1_05725) oppB 1267234..1268157 (-) 924 WP_014991847.1 oligopeptide ABC transporter permease OppB -
  ASU1_RS05775 (ASU1_05730) ruvB 1268320..1269324 (-) 1005 WP_005600359.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ASU1_RS05780 (ASU1_05735) ruvA 1269343..1269948 (-) 606 WP_014991848.1 Holliday junction branch migration protein RuvA Machinery gene
  ASU1_RS05785 (ASU1_05740) potC 1270090..1270857 (-) 768 WP_014991849.1 spermidine/putrescine ABC transporter permease PotC -
  ASU1_RS05790 (ASU1_05745) potB 1270857..1271723 (-) 867 WP_014991850.1 spermidine/putrescine ABC transporter permease PotB -
  ASU1_RS05795 (ASU1_05750) potA 1271710..1272825 (-) 1116 WP_014991851.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  ASU1_RS05800 (ASU1_05755) nadS 1273143..1273439 (-) 297 WP_014991852.1 NadS family protein -
  ASU1_RS05805 (ASU1_05760) - 1273444..1273788 (-) 345 WP_014991853.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22114.65 Da        Isoelectric Point: 6.8546

>NTDB_id=111671 ASU1_RS05780 WP_014991848.1 1269343..1269948(-) (ruvA) [Actinobacillus suis ATCC 33415]
MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNG
VGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKTAERLLVELKGKFKGVPQSDFFEEHSVETIVATHSHDPADE
ARDALVALGYKLADAEKMIKKVNKAGATSEQLIREALKASL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=111671 ASU1_RS05780 WP_014991848.1 1269343..1269948(-) (ruvA) [Actinobacillus suis ATCC 33415]
ATGATCGGAAGATTACACGGTAAAATTATTGAAAAACAACCGCCTGAAATGGTAATTGATGTTCAAGGTGTCGGATATGA
AGTACTACTGCCGATGACGAGCTTTTACAGCTTGCCGCAAGTCGGTGAAGAAGCCACAATCTTTACGCATTTAGTCGTAC
GTGAAGATGCACATTTATTATTTGGTTTTGCACAAAAGCAAGATAGAACTTTATTTCGTGAATTGATTAAAACCAACGGT
GTAGGGCCTAAATTAGCCCTTGCGATTTTATCGGCGATGTCGGTTTCACAATTTGCGAATGCGGTAGAACATGAAGAATT
AGCCAAATTAACTAAAATTCCGGGCATTGGGCGTAAAACAGCCGAGCGTTTATTAGTAGAGCTCAAAGGCAAATTCAAAG
GTGTGCCACAAAGTGATTTCTTTGAAGAACATTCGGTGGAAACGATTGTTGCAACACATTCACACGATCCGGCAGATGAA
GCCCGTGATGCTTTAGTTGCGTTAGGCTATAAACTCGCTGATGCTGAGAAGATGATTAAGAAAGTGAATAAAGCGGGCGC
AACCAGCGAACAATTAATTCGTGAAGCATTAAAAGCCTCTCTTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(157-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.19

100

0.378
  ruvA Streptococcus pneumoniae TIGR4

36.869

98.507

0.363