Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KKKWG1_RS02725 Genome accession   NZ_LN869922
Coordinates   525709..527211 (-) Length   500 a.a.
NCBI ID   WP_060536952.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 520709..532211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS02695 (KKKWG1_0548) aphA 521113..521844 (+) 732 WP_003791412.1 acid phosphatase AphA -
  KKKWG1_RS02700 (KKKWG1_0549) - 521948..522643 (+) 696 WP_019389800.1 tol-pal system YbgF family protein -
  KKKWG1_RS02705 (KKKWG1_0550) - 522640..523740 (+) 1101 WP_032133174.1 hypothetical protein -
  KKKWG1_RS02710 (KKKWG1_0551) murU 523814..524515 (-) 702 WP_032133173.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  KKKWG1_RS02715 (KKKWG1_0552) - 524530..524862 (-) 333 WP_038312302.1 zinc ribbon domain-containing protein YjdM -
  KKKWG1_RS11240 (KKKWG1_0553) - 524895..525068 (-) 174 WP_003785141.1 hypothetical protein -
  KKKWG1_RS02720 (KKKWG1_0554) - 525130..525594 (-) 465 WP_032133171.1 hypothetical protein -
  KKKWG1_RS02725 (KKKWG1_0555) comM 525709..527211 (-) 1503 WP_060536952.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KKKWG1_RS02730 (KKKWG1_0556) - 527222..527500 (-) 279 WP_003785148.1 accessory factor UbiK family protein -
  KKKWG1_RS02735 (KKKWG1_0557) - 527799..528377 (+) 579 WP_032133169.1 biliverdin-producing heme oxygenase -
  KKKWG1_RS11245 - 528443..528571 (-) 129 WP_003785152.1 hypothetical protein -
  KKKWG1_RS02740 (KKKWG1_0558) - 528651..529487 (-) 837 Protein_542 adenosine deaminase family protein -
  KKKWG1_RS02750 (KKKWG1_0560) - 529762..530010 (+) 249 WP_230311240.1 transposase family protein -
  KKKWG1_RS02755 (KKKWG1_0561) - 530038..530604 (+) 567 WP_060536953.1 ISAs1 family transposase -
  KKKWG1_RS02760 (KKKWG1_0562) - 530644..531777 (-) 1134 WP_019389792.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53945.73 Da        Isoelectric Point: 7.5110

>NTDB_id=1114870 KKKWG1_RS02725 WP_060536952.1 525709..527211(-) (comM) [Kingella kingae strain KWG1]
MTFAVVNSRALNGMNAPLVEVEVHLANGLPQCNIVGLPDTEVKESRDRVRAAILQSGFEFPMQKITVNLAPADLPKESGR
FDLPIAIGILAASGQIIANDLERYEFAGELALSGNLRPIRGALAMAWQGQQAGRAFVLPSDNAIQAASMGQITAYGANSL
LEVAAHLNGTQSLAPSRLPDVPKQPAPDSLPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
TDDELTSVWALRSLLPQFTGSLQQDKRRPFRAPHHSASSAALVGGGSDPKPGEISLAHQGVLFLDELPEFDRRVLEMLRE
PLESGEIHISRATRQATYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPDSVKRYRDRISGPLLDRIDLTIEVPTLSAAELV
SAQQGEDSATVLQRVLAARERQYARQGKINAALSSSELDQVAQIQAEAREALGQILEKLSLSARSFHRILRVARTLADLA
QDDEVNRAHIIRAVSFRRAV

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1114870 KKKWG1_RS02725 WP_060536952.1 525709..527211(-) (comM) [Kingella kingae strain KWG1]
ATGACGTTTGCGGTGGTCAATAGTCGTGCGCTCAATGGTATGAACGCGCCTTTGGTGGAAGTGGAAGTGCATTTGGCAAA
CGGTTTGCCGCAATGCAACATTGTGGGTTTGCCCGACACCGAAGTCAAAGAAAGTCGCGACCGCGTGCGTGCGGCAATTT
TGCAAAGTGGCTTTGAGTTCCCCATGCAAAAAATCACGGTCAATCTTGCGCCTGCGGATTTGCCCAAGGAATCGGGGCGA
TTTGATTTGCCGATTGCGATTGGTATTTTGGCAGCCAGTGGGCAAATTATCGCCAACGATTTGGAGCGATACGAATTTGC
TGGCGAATTAGCGTTGTCGGGCAACTTGCGTCCGATTCGCGGTGCGTTGGCAATGGCGTGGCAGGGTCAGCAAGCAGGCA
GAGCGTTTGTGTTGCCCAGCGACAATGCGATTCAAGCCGCCAGCATGGGGCAAATCACGGCATACGGCGCGAACAGTTTG
TTGGAAGTGGCGGCGCATTTAAACGGCACACAGAGCCTTGCGCCCAGCCGTTTGCCCGATGTGCCAAAGCAGCCTGCACC
CGATTCTTTGCCCGATTTGCGCGATGTGAAAGGACAGCACACGGCGCGATTGGCATTGGAAATTGCCGCAGCAGGCGGAC
ACAGTTTGTTGATGATGGGGCCACCAGGCACCGGCAAATCCATGCTCGCGCAACGTTTGCCGTCTATTTTGCCGCCTTTG
ACCGATGATGAATTGACCAGTGTTTGGGCGTTGCGCTCGCTGTTGCCGCAGTTCACAGGCAGCCTGCAACAGGATAAACG
CCGACCGTTTCGTGCGCCACATCATTCGGCAAGTTCTGCTGCGTTGGTGGGTGGCGGTTCAGACCCAAAACCTGGCGAAA
TTTCGTTGGCGCATCAAGGTGTTTTGTTTTTGGACGAATTGCCCGAATTTGACCGCCGTGTGTTGGAAATGTTGCGCGAA
CCGTTGGAAAGCGGCGAAATTCATATTTCTCGGGCAACGCGACAGGCGACTTATCCAGCCAAATTTCAATTAGTGGCGGC
GATGAATCCTTGTCCGTGCGGCTATTTGGGACACCCAAGCAAACCGTGTCGCTGCACGCCCGATAGCGTCAAACGATACC
GTGACCGTATTTCGGGCCCGCTGCTTGACCGCATTGATTTGACGATTGAAGTACCCACCCTATCGGCAGCGGAACTGGTT
AGCGCACAACAAGGCGAAGACAGCGCAACCGTGTTACAGCGCGTGTTGGCAGCGCGAGAACGCCAATATGCGCGACAAGG
CAAAATCAACGCGGCATTGTCGTCCAGCGAATTAGACCAAGTTGCCCAAATCCAAGCCGAAGCGCGTGAAGCGTTGGGGC
AGATTTTGGAAAAATTGTCGCTGTCGGCGCGCAGTTTTCATCGCATTTTGCGTGTGGCACGGACGTTGGCGGATTTGGCG
CAAGACGATGAAGTTAATCGGGCGCACATTATTCGAGCAGTAAGTTTTCGCCGTGCTGTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-398)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.414

99.6

0.532
  comM Vibrio campbellii strain DS40M4

51.606

99.6

0.514
  comM Haemophilus influenzae Rd KW20

49.703

100

0.502
  comM Glaesserella parasuis strain SC1401

49.4

100

0.494
  comM Legionella pneumophila str. Paris

47.316

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.316

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44

100

0.44

Multiple sequence alignment