Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KKKWG1_RS01315 Genome accession   NZ_LN869922
Coordinates   244428..245615 (-) Length   395 a.a.
NCBI ID   WP_003792052.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 239428..250615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS01280 (KKKWG1_0265) - 239603..241021 (+) 1419 WP_019390328.1 sodium:alanine symporter family protein -
  KKKWG1_RS01290 (KKKWG1_0266) - 241181..242155 (-) 975 WP_019390329.1 polyprenyl synthetase family protein -
  KKKWG1_RS01295 (KKKWG1_0267) rpmA 242274..242546 (-) 273 WP_003788168.1 50S ribosomal protein L27 -
  KKKWG1_RS01300 (KKKWG1_0268) rplU 242572..242877 (-) 306 WP_019390330.1 50S ribosomal protein L21 -
  KKKWG1_RS01305 (KKKWG1_0269) - 242980..243867 (-) 888 WP_019390331.1 polyprenyl synthetase family protein -
  KKKWG1_RS01310 (KKKWG1_0270) xseB 243860..244087 (-) 228 WP_003788162.1 exodeoxyribonuclease VII small subunit -
  KKKWG1_RS01315 (KKKWG1_0271) dprA 244428..245615 (-) 1188 WP_003792052.1 DNA-processing protein DprA Machinery gene
  KKKWG1_RS01320 (KKKWG1_0272) tsaA 245761..246447 (-) 687 WP_019390332.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  KKKWG1_RS01325 (KKKWG1_0273) - 246527..247084 (-) 558 WP_003788155.1 porin family protein -
  KKKWG1_RS01330 (KKKWG1_0274) mnmE 247195..248574 (+) 1380 WP_019390333.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  KKKWG1_RS01335 (KKKWG1_0275) gap 248924..249928 (-) 1005 WP_019390334.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 42399.74 Da        Isoelectric Point: 5.3009

>NTDB_id=1114867 KKKWG1_RS01315 WP_003792052.1 244428..245615(-) (dprA) [Kingella kingae strain KWG1]
MVTESERCAWIELALTPYIGAESFLRLIEHCGSAAEALRAPVNLVAQLAHHGKQAAAAWTDKSKAKSACEAALQWEQQEN
CRLLLLCDDDYPQLLTEGLTPPPLLFVRGQMACLQRPAIGIVGGRRATPQAVRMAGDFGKALSEKGIAVISGMATGIDAA
AHEGALQGSSSTIAVWGTGIDRIYPQSNQKLAYQIAERGAIISEFPLGTRPVAGNFPRRNRIIAALSWATLVVEATVESG
SLITARLAAEMGREVMAIPSSIDNLLAKGCHKLIKEGAKLVECVDDIVQECPLLLGESVQAALDLPTTLSTRKKREKTAK
PIAQISEVNEPETPSSLHENSDNVLLNAMGFSPIHPDLLAENLNLPAVDVYAELTELELDGWIVSMAGGRFQRVK

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=1114867 KKKWG1_RS01315 WP_003792052.1 244428..245615(-) (dprA) [Kingella kingae strain KWG1]
ATGGTTACAGAATCAGAACGCTGTGCATGGATAGAATTGGCTCTAACCCCTTATATTGGCGCGGAAAGTTTTTTGCGCCT
GATTGAGCATTGCGGTTCGGCAGCCGAAGCCTTGCGTGCGCCAGTCAATTTGGTGGCGCAGTTGGCACATCATGGCAAAC
AAGCTGCCGCCGCGTGGACAGACAAAAGTAAGGCAAAAAGTGCGTGTGAAGCGGCTTTGCAATGGGAGCAACAGGAAAAT
TGTAGGCTGCTTTTGTTGTGCGATGACGATTATCCACAGCTCTTAACCGAAGGTTTAACGCCACCTCCATTGCTGTTTGT
GCGTGGACAAATGGCGTGTTTACAGCGCCCTGCAATCGGCATTGTTGGCGGCAGACGCGCCACGCCACAAGCGGTACGAA
TGGCTGGCGATTTTGGTAAAGCATTGAGTGAAAAAGGCATTGCGGTTATTTCGGGCATGGCAACAGGCATTGACGCGGCA
GCACACGAAGGCGCGTTGCAAGGATCGAGCAGCACGATTGCGGTGTGGGGAACGGGCATTGACCGAATTTATCCACAGAG
CAACCAAAAATTAGCATATCAAATTGCCGAACGTGGCGCGATTATTTCCGAATTTCCATTGGGAACGCGCCCTGTTGCAG
GCAATTTTCCGCGCCGAAATCGGATTATTGCGGCGTTGAGTTGGGCGACTTTGGTGGTGGAAGCGACGGTGGAAAGTGGC
TCGCTCATCACAGCGCGATTGGCGGCGGAAATGGGGCGCGAAGTCATGGCGATTCCCAGTTCTATTGACAATCTGCTTGC
CAAAGGTTGCCATAAACTCATCAAAGAAGGCGCGAAATTAGTGGAATGCGTGGACGATATTGTGCAGGAATGTCCGCTGT
TGTTGGGCGAATCGGTGCAGGCTGCTTTGGATTTACCCACAACTTTATCCACAAGAAAGAAACGCGAAAAAACAGCGAAA
CCAATCGCCCAAATAAGCGAAGTAAACGAACCCGAAACGCCAAGCAGCCTGCACGAAAACAGCGATAATGTGTTGCTCAA
TGCGATGGGATTTTCGCCTATCCACCCTGATTTATTGGCAGAAAATTTAAATTTGCCTGCTGTGGACGTGTATGCCGAGC
TAACCGAGTTGGAATTGGACGGCTGGATTGTGTCTATGGCTGGCGGACGTTTTCAGCGTGTGAAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-282)

DprA winged helix domain (DprA_WH)

(339-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

57.895

100

0.585
  dprA Neisseria meningitidis MC58

57.895

100

0.585
  dprA Neisseria gonorrhoeae MS11

56.359

100

0.572
  dprA Neisseria gonorrhoeae strain FA1090

55.86

100

0.567
  dprA Vibrio campbellii strain DS40M4

36.896

99.494

0.367
  dprA Vibrio cholerae strain A1552

36.181

100

0.365

Multiple sequence alignment