Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CCOS191_RS00655 Genome accession   NZ_LN847264
Coordinates   135115..136602 (-) Length   495 a.a.
NCBI ID   WP_046853666.1    Uniprot ID   A0A0F7Y1E0
Organism   Pseudomonas sp. CCOS 191     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 130115..141602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCOS191_RS00625 (CCOS191_0126) - 130288..130572 (-) 285 WP_046853660.1 DUF3077 domain-containing protein -
  CCOS191_RS00630 - 131075..131353 (+) 279 WP_046853661.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CCOS191_RS00635 (CCOS191_0127) - 131366..131650 (+) 285 WP_046853662.1 HigA family addiction module antitoxin -
  CCOS191_RS00640 (CCOS191_0128) - 131654..133441 (-) 1788 WP_046853663.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  CCOS191_RS00645 (CCOS191_0129) - 133637..134653 (-) 1017 WP_046853664.1 alpha/beta hydrolase -
  CCOS191_RS00650 (CCOS191_0130) - 134685..134936 (-) 252 WP_046853665.1 DUF2790 domain-containing protein -
  CCOS191_RS00655 (CCOS191_0131) comM 135115..136602 (-) 1488 WP_046853666.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CCOS191_RS00660 (CCOS191_0132) - 136802..137068 (+) 267 WP_046853667.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  CCOS191_RS00665 (CCOS191_0133) - 137078..137350 (-) 273 WP_046853668.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family -
  CCOS191_RS00670 (CCOS191_0134) - 137495..137875 (-) 381 WP_046853669.1 DUF2493 domain-containing protein -
  CCOS191_RS00675 (CCOS191_0135) mgtA 137886..140597 (-) 2712 WP_046853670.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52939.74 Da        Isoelectric Point: 8.0886

>NTDB_id=1114521 CCOS191_RS00655 WP_046853666.1 135115..136602(-) (comM) [Pseudomonas sp. CCOS 191]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVAALDGIECLGELALSGTLRPVQGVLPAALAARDAGRALVVPRENAEEASLASGLVVYAVGHL
RELVAHLNAQPALSPYTANGLLLEQRPYPDLSEVQGQIAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSG
ETSASVGQRVAEARELQQRRQGCANAFLDLKGLRRHCPLEPVDQVWLEQACERLTLSLRAAHRLLKVARTLADLEGAQAI
ARSHLAEALQYRPSA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1114521 CCOS191_RS00655 WP_046853666.1 135115..136602(-) (comM) [Pseudomonas sp. CCOS 191]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTGGGGGTGCAAGCACCCGCCGTCAGCGTCGAAACCCATCTGGCCAA
CGGCCTGCCCACGCTCACCCTGGTCGGTCTACCGGAGACCACGGTCAAGGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGGCTGGACTACCCGGCCCGGCGCATCACCCAGAGCCTCGCCCCGGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACCTGGCCATCGCCCTGGGCATCCTGGCCGCTAATGGCCAGGTACCGGTTGCCGCCCTCGACGGCATCGAATGCCT
GGGCGAACTGGCGCTGTCGGGTACGTTGCGTCCGGTACAGGGCGTATTACCTGCGGCACTGGCGGCGCGAGACGCGGGTC
GGGCGCTGGTGGTGCCCAGGGAAAACGCCGAAGAGGCGAGCCTGGCAAGCGGCCTGGTGGTGTACGCGGTGGGGCATCTG
CGGGAACTGGTGGCCCACCTGAATGCGCAACCGGCATTGTCACCCTATACCGCGAATGGCCTATTGCTGGAGCAACGCCC
CTACCCGGACCTCAGCGAAGTGCAGGGCCAGATCGCTGCCAAGCGGGCGCTGCTGGTCGCCGCAGCCGGCGCGCACAATC
TGCTGTTCTCCGGCCCGCCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGGCTGCTACCGCCGCTGGACGAG
CGCGAGGCGCTTGAGGTGGCGGCGATCCGCTCGGTCAGCGGCCATGCCCCGCTCGATTGCTGGCCACAGCGGCCGTTCCG
CCACCCCCACCACTCGGCCTCCGGTCCAGCGCTGGTGGGGGGTGGCAGCCGACCGCAACCCGGCGAGATCACCCTGGCGC
ACCATGGCGTGCTGTTCCTCGATGAGCTGCCCGAATTTGAACGGCGCGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCC
GGCGAGATCGTGGTGGCCCGGGCCAAGGACCGGGTGCGCTTCCCGGCGCGCTTTCAACTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCACCGGCCGTTGCCGGTGCAGCAGCGAGCAGATCCAGCGCTACCGCAACAAGTTGT
CCGGCCCCCTGCTCGACCGCATCGACCTGCACCTGACGGTGGCCCGGGAAAGTACCGTGCTGACTCACCAGCCCAGCGGC
GAGACCAGCGCCAGTGTTGGCCAGCGGGTGGCCGAGGCACGGGAGCTGCAGCAGCGCCGGCAGGGCTGCGCCAATGCCTT
TCTCGACCTCAAGGGGCTGCGCCGGCATTGCCCGCTGGAGCCGGTCGACCAGGTCTGGCTGGAGCAGGCCTGCGAACGGC
TGACGCTGTCGTTGCGGGCAGCGCACCGACTGCTGAAGGTGGCCCGCACCCTGGCGGACCTGGAGGGCGCGCAAGCCATC
GCCAGGTCGCACCTGGCGGAGGCGCTGCAGTATCGGCCCAGCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7Y1E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55

100

0.556
  comM Glaesserella parasuis strain SC1401

54.183

100

0.549
  comM Vibrio campbellii strain DS40M4

54.949

100

0.549
  comM Vibrio cholerae strain A1552

54.747

100

0.547
  comM Legionella pneumophila str. Paris

48.992

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.483

Multiple sequence alignment