Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | AT689_RS03730 | Genome accession | NZ_LN831051 |
| Coordinates | 705741..706694 (+) | Length | 317 a.a. |
| NCBI ID | WP_000345130.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain NCTC7465 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 700741..711694
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AT689_RS03680 (ERS445053_00720) | - | 700798..701163 (+) | 366 | WP_000286415.1 | DUF1033 family protein | - |
| AT689_RS03685 (ERS445053_00721) | comGA/cglA/cilD | 701239..702180 (+) | 942 | WP_000249571.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AT689_RS03690 (ERS445053_00722) | comGB/cglB | 702128..703144 (+) | 1017 | WP_001844679.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AT689_RS03695 (ERS445053_00723) | comGC/cglC | 703146..703472 (+) | 327 | WP_000738633.1 | comG operon protein ComGC | Machinery gene |
| AT689_RS03700 (ERS445053_00724) | comGD/cglD | 703465..703869 (+) | 405 | WP_000588020.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AT689_RS03705 (ERS445053_00725) | comGE/cglE | 703832..704134 (+) | 303 | WP_000413382.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AT689_RS03710 (ERS445053_00726) | comGF/cglF | 704097..704558 (+) | 462 | WP_000250531.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AT689_RS03715 (ERS445053_00727) | comGG/cglG | 704536..704949 (+) | 414 | WP_000265631.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AT689_RS12440 | - | 705086..705680 (+) | 595 | Protein_717 | class I SAM-dependent methyltransferase | - |
| AT689_RS03730 (ERS445053_00729) | comYH | 705741..706694 (+) | 954 | WP_000345130.1 | class I SAM-dependent methyltransferase | Machinery gene |
| AT689_RS03735 (ERS445053_00730) | - | 706745..707935 (+) | 1191 | WP_000167766.1 | acetate kinase | - |
| AT689_RS13375 | - | 707936..708067 (+) | 132 | WP_000768904.1 | hypothetical protein | - |
| AT689_RS03740 (ERS445053_00731) | rnpA | 708084..708455 (+) | 372 | WP_000739246.1 | ribonuclease P protein component | - |
| AT689_RS03745 (ERS445053_00732) | - | 708430..709254 (+) | 825 | WP_000727904.1 | membrane protein insertase YidC | - |
| AT689_RS03750 (ERS445053_00733) | jag | 709273..710280 (+) | 1008 | WP_000260016.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| AT689_RS03755 (ERS445053_00734) | - | 710310..710933 (+) | 624 | WP_000932635.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35642.89 Da Isoelectric Point: 4.3259
>NTDB_id=1114372 AT689_RS03730 WP_000345130.1 705741..706694(+) (comYH) [Streptococcus pneumoniae strain NCTC7465]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=1114372 AT689_RS03730 WP_000345130.1 705741..706694(+) (comYH) [Streptococcus pneumoniae strain NCTC7465]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
54.952 |
98.738 |
0.543 |
| comYH | Streptococcus mutans UA159 |
54.633 |
98.738 |
0.539 |