Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   AT683_RS02890 Genome accession   NZ_LN831035
Coordinates   587299..588636 (+) Length   445 a.a.
NCBI ID   WP_011272046.1    Uniprot ID   Q4QNB0
Organism   Haemophilus influenzae strain NCTC8143     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582299..593636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT683_RS02865 (ERS450003_00564) - 582365..584959 (-) 2595 WP_011272051.1 penicillin-binding protein 1A -
  AT683_RS02870 (ERS450003_00565) comA 585058..585855 (+) 798 WP_011272050.1 pilus assembly protein PilM Machinery gene
  AT683_RS02875 comB 585856..586361 (+) 506 Protein_547 competence protein ComB -
  AT683_RS02880 (ERS450003_00567) comC 586358..586879 (+) 522 WP_011272048.1 competence protein ComC Machinery gene
  AT683_RS02885 (ERS450003_00568) comD 586876..587289 (+) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  AT683_RS02890 (ERS450003_00569) comE 587299..588636 (+) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  AT683_RS02895 (ERS450003_00570) - 588649..589335 (+) 687 WP_011272045.1 ComF family protein -
  AT683_RS02900 (ERS450003_00571) nfuA 589411..590007 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  AT683_RS02905 (ERS450003_00572) nudC 590074..590868 (+) 795 WP_005686893.1 NAD(+) diphosphatase -
  AT683_RS02910 (ERS450003_00573) - 590904..591494 (+) 591 WP_005686892.1 YjaG family protein -
  AT683_RS02915 (ERS450003_00574) - 591634..591906 (+) 273 WP_005630954.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49137.44 Da        Isoelectric Point: 7.7981

>NTDB_id=1114276 AT683_RS02890 WP_011272046.1 587299..588636(+) (comE) [Haemophilus influenzae strain NCTC8143]
MKKYFLKCGYFLVCFCLPLIVFANPKTDNECFFIRLSQAPLAQTLEQLAFQQDVNLVMGERLEGNISLKLNNIDMPRLLK
IIAKSKHLTLNKDDGVYYLNGSQSGKGQVAGNLTTNEPHLVSHTVKLHFAKASELMKSLTTGSGSLLSSAGSITFDDRSN
LLVIQDEPRFVQNIKKLIAEMDKPIEQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVN
FATTTTPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAV
LGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDI
PVIKRLFSKESERHQKRELVIFVTPHILKAGETLEALKQKSAGKK

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1114276 AT683_RS02890 WP_011272046.1 587299..588636(+) (comE) [Haemophilus influenzae strain NCTC8143]
ATGAAGAAATATTTTTTAAAGTGCGGTTATTTTTTAGTGTGTTTTTGTTTGCCATTAATCGTTTTTGCTAATCCTAAAAC
AGATAACGAATGTTTTTTTATTCGTTTATCGCAAGCACCTTTAGCTCAAACACTGGAGCAATTAGCTTTTCAACAAGATG
TGAATTTAGTGATGGGTGAGAGGTTAGAAGGCAATATTTCTTTGAAATTAAACAATATTGATATGCCACGTTTGCTAAAA
ATAATCGCAAAAAGTAAGCATCTTACTTTGAATAAAGATGATGGGGTTTATTATTTAAACGGCAGTCAATCTGGCAAAGG
TCAAGTTGCAGGAAATCTTACGACAAATGAACCGCACTTAGTCAGCCACACGGTAAAACTTCATTTTGCTAAAGCCTCTG
AATTAATGAAATCCTTAACAACAGGAAGTGGATCTTTGCTTTCTTCTGCGGGGAGCATTACCTTTGATGATCGCAGTAAT
TTGCTGGTTATTCAGGATGAACCTCGTTTTGTGCAAAATATCAAAAAACTGATTGCTGAAATGGATAAGCCTATTGAACA
GATCGCTATTGAAGCGCGAATTGTGACAATTACGGATGAGAGTTTGAAAGAACTTGGCGTTCGGTGGGGGATTTTTAATC
CAACTGAAAATGCAAGACGAGTTGCGGGCAGCCTTACAGGCAATAGCTTTGAAAATATTGCGGATAATCTTAATGTAAAT
TTTGCGACAACGACGACACCTGCTGGCTCTATAGCATTACAAGTCGCGAAAATTAATGGGCGATTGCTTGATTTAGAATT
GAGTGCGTTGGAGCGTGAAAATAATGTAGAAATTATTGCAAGTCCTCGCTTACTCACTACCAATAAGAAAAGTGCGAGCA
TTAAACAGGGGACAGAAATTCCTTACATCGTGAGTAATACTCGTAACGATACGCAATCTGTGGAATTTCGTGAGGCAGTA
CTTGGTTTGGAAGTGACGCCACATATTTCTAAAGATAACAATATCTTACTTGATTTATTGGTAAGTCAAAATTCCCCTGG
TTCTCGTGTCGCTTATGGACAAAATGAGGTGGTTTCTATTGATAAGCAAGAAATTAATACTCAGGTTTTTGCCAAAGATG
GGGAAACCATTGTGCTTGGCGGCGTATTTCACGACACAATCACGAAAAGCGAAGATAAAGTGCCATTGCTTGGCGATATA
CCCGTTATTAAACGATTATTTAGCAAAGAAAGTGAACGACATCAAAAACGTGAGCTCGTGATTTTCGTCACGCCGCATAT
TTTAAAAGCAGGAGAAACGTTAGAGGCGTTGAAACAAAAAAGTGCGGGGAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(123-187)

Bacterial type II and III secretion system protein (Secretin)

(269-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae 86-028NP

100

100

1
  comE Haemophilus influenzae Rd KW20

97.528

100

0.975
  comE Glaesserella parasuis strain SC1401

52

95.506

0.497
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.625

100

0.409
  pilQ Vibrio cholerae strain A1552

40.625

100

0.409
  pilQ Vibrio campbellii strain DS40M4

42.959

94.157

0.404

Multiple sequence alignment