Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | AT683_RS02885 | Genome accession | NZ_LN831035 |
| Coordinates | 586876..587289 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain NCTC8143 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 581876..592289
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AT683_RS02865 (ERS450003_00564) | - | 582365..584959 (-) | 2595 | WP_011272051.1 | penicillin-binding protein 1A | - |
| AT683_RS02870 (ERS450003_00565) | comA | 585058..585855 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| AT683_RS02875 | comB | 585856..586361 (+) | 506 | Protein_547 | competence protein ComB | - |
| AT683_RS02880 (ERS450003_00567) | comC | 586358..586879 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| AT683_RS02885 (ERS450003_00568) | comD | 586876..587289 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| AT683_RS02890 (ERS450003_00569) | comE | 587299..588636 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| AT683_RS02895 (ERS450003_00570) | - | 588649..589335 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| AT683_RS02900 (ERS450003_00571) | nfuA | 589411..590007 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| AT683_RS02905 (ERS450003_00572) | nudC | 590074..590868 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| AT683_RS02910 (ERS450003_00573) | - | 590904..591494 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| AT683_RS02915 (ERS450003_00574) | - | 591634..591906 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=1114275 AT683_RS02885 WP_011272047.1 586876..587289(+) (comD) [Haemophilus influenzae strain NCTC8143]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1114275 AT683_RS02885 WP_011272047.1 586876..587289(+) (comD) [Haemophilus influenzae strain NCTC8143]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |