Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LHA_RS11235 Genome accession   NZ_LN681225
Coordinates   2550054..2551565 (+) Length   503 a.a.
NCBI ID   WP_045106628.1    Uniprot ID   A0A0A8URQ3
Organism   Legionella hackeliae strain ATCC 35250     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2545054..2556565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA_RS11200 - 2546320..2547018 (+) 699 WP_045106621.1 TVP38/TMEM64 family protein -
  LHA_RS11205 (LHA_2403) - 2546960..2547778 (-) 819 WP_045106622.1 aminotransferase class IV -
  LHA_RS11210 (LHA_2404) - 2547785..2547964 (-) 180 WP_045106623.1 PA3496 family putative envelope integrity protein -
  LHA_RS11215 (LHA_2405) - 2548150..2548725 (+) 576 WP_045106624.1 5-formyltetrahydrofolate cyclo-ligase -
  LHA_RS11220 (LHA_2406) - 2548722..2549189 (+) 468 WP_045106625.1 EVE domain-containing protein -
  LHA_RS11225 (LHA_2407) - 2549281..2549619 (-) 339 WP_045106626.1 P-II family nitrogen regulator -
  LHA_RS11230 (LHA_2408) ubiK 2549715..2549972 (+) 258 WP_045106627.1 ubiquinone biosynthesis accessory factor UbiK -
  LHA_RS11235 (LHA_2409) comM 2550054..2551565 (+) 1512 WP_045106628.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LHA_RS11240 (LHA_2410) - 2551708..2553489 (+) 1782 WP_045106629.1 hypothetical protein -
  LHA_RS11245 (LHA_2411) - 2553502..2554233 (-) 732 WP_045106630.1 SDR family oxidoreductase -
  LHA_RS11250 (LHA_2412) - 2554259..2555158 (-) 900 WP_045106631.1 aspartate carbamoyltransferase catalytic subunit -
  LHA_RS11255 (LHA_2413) ruvX 2555164..2555583 (-) 420 WP_045106632.1 Holliday junction resolvase RuvX -
  LHA_RS11260 (LHA_2414) - 2555613..2556176 (-) 564 WP_045106633.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54918.29 Da        Isoelectric Point: 8.4411

>NTDB_id=1113930 LHA_RS11235 WP_045106628.1 2550054..2551565(+) (comM) [Legionella hackeliae strain ATCC 35250]
MNLAFSKTRSTVGIIAQPVSVEVHLSNGLPGFTIVGLAETAIKESKDRVRSAIINSQFEFPCRKITVNLAPANLPKSGSG
FDLPIALGILAASGQLPVEKLASYEFIGELALSGQLRGISAIIPAVLAVRRDNQRLIIATANAEEASLAGYSDVLSATSL
REVCSFLCQDTPLKSLPNRPETSNAHSKIDWSDVKGQVHAKRAMEIAACGGHSILLSGPPGSGKTMLAKRFSTLLPELTE
TQALECAAINSVRGRFPDFNDWRSPPFRSPHHTASQVALVGGGNPPKPGEISLAHHGVLFLDELPEFHKQVLETLREPLE
TGNIWISRAATQIEFPAQFQLLAAMNPCPCGQWGNPQANCLCSPDRITRYLAKLSAPLLDRIDMQITVQALTQEELIKPN
STTPNESSRIRQIVIQVRSLQLQRQQCMNAQLSARDCEDICQLGHSEQNFLSEAMNRLKLSARAYHRLLKVARTIADMKA
CNKVDLIALQQALSFRQMLHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1113930 LHA_RS11235 WP_045106628.1 2550054..2551565(+) (comM) [Legionella hackeliae strain ATCC 35250]
ATGAATCTCGCTTTCAGCAAAACGCGTAGTACCGTGGGTATTATCGCGCAACCCGTTTCTGTCGAAGTCCATTTATCAAA
TGGCTTACCCGGCTTCACCATCGTTGGACTTGCCGAAACAGCCATTAAAGAAAGTAAAGACAGAGTGCGCAGCGCGATCA
TCAATAGTCAATTTGAATTTCCATGTCGCAAAATCACCGTTAATCTGGCTCCAGCAAATTTACCTAAATCAGGAAGTGGT
TTTGATTTACCTATTGCCTTAGGCATTCTTGCTGCCTCAGGTCAACTGCCAGTAGAAAAACTAGCATCTTATGAATTCAT
CGGTGAATTGGCTTTAAGTGGTCAACTACGTGGTATATCAGCAATTATTCCAGCCGTCCTGGCTGTCCGGCGAGATAATC
AACGATTAATTATTGCGACAGCCAACGCAGAAGAAGCGTCATTGGCAGGGTATAGTGACGTTCTGAGTGCAACAAGTTTA
CGCGAAGTCTGCAGCTTTTTGTGCCAAGATACACCACTTAAGTCTCTTCCCAATCGACCAGAAACAAGTAATGCGCATTC
TAAAATTGACTGGTCTGATGTTAAAGGTCAAGTCCATGCGAAACGAGCAATGGAAATTGCTGCTTGTGGCGGCCACAGTA
TTTTATTAAGCGGCCCTCCTGGTAGTGGTAAAACCATGCTTGCGAAACGATTCAGTACTCTTTTACCCGAACTTACTGAA
ACACAAGCACTCGAGTGTGCCGCAATAAACTCTGTGCGAGGACGCTTTCCTGATTTTAATGACTGGCGCTCTCCTCCTTT
TCGCTCGCCCCATCATACAGCGTCTCAAGTTGCGTTGGTGGGTGGTGGTAATCCGCCTAAACCGGGAGAAATTTCATTAG
CCCATCATGGTGTTTTATTTCTTGATGAACTACCTGAATTTCATAAACAAGTTTTAGAGACATTGCGTGAACCCTTAGAA
ACCGGCAATATCTGGATTTCTCGTGCAGCTACTCAAATTGAATTTCCAGCACAGTTCCAACTGCTTGCCGCAATGAACCC
TTGTCCTTGTGGACAATGGGGAAATCCTCAGGCAAATTGTTTATGCAGCCCAGATCGCATTACTCGCTATCTGGCAAAGT
TATCAGCTCCGCTACTTGACCGAATTGACATGCAAATAACCGTGCAAGCCCTAACTCAAGAAGAATTGATTAAACCTAAT
TCAACAACGCCCAACGAAAGTAGCCGTATCAGACAAATAGTAATACAAGTAAGATCCCTGCAATTACAACGGCAACAGTG
TATGAACGCTCAACTGAGCGCTAGAGATTGTGAAGACATTTGTCAATTAGGACATAGTGAGCAGAATTTTTTGAGTGAAG
CGATGAACCGCCTTAAATTATCAGCACGCGCCTATCATCGACTTCTAAAAGTAGCAAGAACAATTGCTGACATGAAGGCG
TGCAATAAGGTAGACTTAATCGCATTGCAGCAAGCGCTGTCCTTTAGACAAATGTTGCACTTGCCTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8URQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

74.751

100

0.748
  comM Legionella pneumophila strain ERS1305867

74.751

100

0.748
  comM Vibrio cholerae strain A1552

50.491

100

0.511
  comM Haemophilus influenzae Rd KW20

50

100

0.503
  comM Vibrio campbellii strain DS40M4

50.099

100

0.503
  comM Glaesserella parasuis strain SC1401

47.826

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.289

99.205

0.439

Multiple sequence alignment