Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CS367_RS13290 Genome accession   NZ_CM008894
Coordinates   2815910..2816443 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia marcescens strain 12TM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2810910..2821443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS367_RS13260 (CS367_13220) - 2811234..2812595 (-) 1362 WP_033636185.1 NCS2 family permease -
  CS367_RS13265 (CS367_13225) - 2812928..2813335 (-) 408 WP_033649719.1 VOC family protein -
  CS367_RS13270 (CS367_13230) - 2813383..2814051 (-) 669 WP_101427451.1 glutathione S-transferase -
  CS367_RS13275 (CS367_13235) - 2814048..2814491 (-) 444 WP_049195289.1 lipocalin-like domain-containing protein -
  CS367_RS13280 (CS367_13240) - 2814688..2814948 (+) 261 WP_033636189.1 YdgH/BhsA/McbA-like domain containing protein -
  CS367_RS13285 (CS367_13245) - 2815098..2815847 (+) 750 WP_049195291.1 3-oxoacyl-ACP reductase family protein -
  CS367_RS13290 (CS367_13250) ssb 2815910..2816443 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CS367_RS13300 (CS367_13255) uvrA 2816721..2819549 (+) 2829 WP_033636192.1 excinuclease ABC subunit UvrA -
  CS367_RS13305 (CS367_13260) - 2819778..2820830 (+) 1053 WP_039569632.1 NAD(P)-dependent alcohol dehydrogenase -
  CS367_RS13310 (CS367_13265) maa 2820861..2821418 (-) 558 WP_041036886.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=111385 CS367_RS13290 WP_033654707.1 2815910..2816443(-) (ssb) [Serratia marcescens strain 12TM]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=111385 CS367_RS13290 WP_033654707.1 2815910..2816443(-) (ssb) [Serratia marcescens strain 12TM]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362

Multiple sequence alignment