Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LMI_RS11825 Genome accession   NZ_LN614830
Coordinates   2665223..2666740 (+) Length   505 a.a.
NCBI ID   WP_045099985.1    Uniprot ID   A0A098GH67
Organism   Legionella micdadei strain ATCC 33218     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2660223..2671740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMI_RS11790 (LMI_2535) - 2661012..2661200 (-) 189 WP_045099978.1 hypothetical protein -
  LMI_RS11795 (LMI_2537) - 2661526..2662110 (+) 585 WP_045099979.1 5-formyltetrahydrofolate cyclo-ligase -
  LMI_RS11800 (LMI_2538) - 2662103..2662570 (+) 468 WP_045099980.1 EVE domain-containing protein -
  LMI_RS11805 (LMI_2539) - 2662658..2662996 (-) 339 WP_045099981.1 P-II family nitrogen regulator -
  LMI_RS11810 (LMI_2540) - 2663033..2664268 (-) 1236 WP_045099982.1 FAD-binding oxidoreductase -
  LMI_RS11815 (LMI_2541) - 2664408..2664659 (+) 252 WP_045099983.1 hypothetical protein -
  LMI_RS11820 (LMI_2542) - 2664896..2665165 (+) 270 WP_045099984.1 accessory factor UbiK family protein -
  LMI_RS11825 (LMI_2543) comM 2665223..2666740 (+) 1518 WP_045099985.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LMI_RS11830 (LMI_2544) - 2666822..2667646 (-) 825 WP_045099986.1 hypothetical protein -
  LMI_RS11835 (LMI_2545) - 2668103..2670898 (+) 2796 WP_045099987.1 RasGEF domain-containing protein -
  LMI_RS11840 (LMI_2546) - 2671013..2671594 (-) 582 WP_045100747.1 Maf family protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55178.36 Da        Isoelectric Point: 7.4677

>NTDB_id=1113657 LMI_RS11825 WP_045099985.1 2665223..2666740(+) (comM) [Legionella micdadei strain ATCC 33218]
MNLAFSKTRSAVGIQAQPVSVEVHLSNGLPSFTIVGLAETAVKESKDRVRSAILNSQFDFPCRKITVNLAPADLPKSGSG
FDLPIAIGILAASGQISSQKLASHEFIGELALSGNLRGISAIIPVVLAAHRDKQLLVIAAANAEEASLAGQDGVYVANNL
REVCSYLCQDTPLQPLPPKPDAYHSGNELDWSDVKGQHHAKLALEIAACGGHSVLLCGPPGSGKTMLAKRFNTLLPQLTE
EEALECAAINSIHGRQLDFHKWRCPPFRSPHHTASPVALVGGGNPPKPGDISLAHHGVLFLDELPEFHRHVLETLREPLE
SGHICISRAAVQTDFPAKFQLIAAMNPCPCGQWGNPQADCLCTPERINRYLAKLSAPLLDRIDMQINVQALPQSELIKPH
EHGGTQSDEIRQFVTKTRLIQLERQNCINAQLSVKDCERICELKDEERQFLSYALDRLKLSARAYHRLLKVARTIADMNG
LARVELSCLQQSLSFKQTIKQQSKE

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1113657 LMI_RS11825 WP_045099985.1 2665223..2666740(+) (comM) [Legionella micdadei strain ATCC 33218]
ATGAATCTCGCATTTAGCAAAACGCGCTCTGCCGTCGGTATTCAGGCACAGCCCGTCTCAGTTGAAGTCCATTTATCAAA
CGGGTTACCCAGTTTTACTATCGTTGGACTGGCTGAAACCGCCGTAAAAGAAAGCAAGGATCGTGTACGCAGTGCAATCC
TAAATAGCCAGTTTGATTTTCCCTGCCGTAAAATCACGGTCAATTTAGCACCCGCCGATTTACCTAAGTCAGGCAGCGGC
TTCGATTTGCCTATAGCCATTGGTATTCTTGCCGCCTCTGGACAAATTTCTTCACAAAAACTCGCTTCACATGAATTTAT
TGGCGAGCTGGCATTAAGCGGTAATCTACGAGGCATATCAGCAATCATCCCCGTGGTTCTTGCTGCCCATCGGGATAAAC
AATTATTGGTCATCGCCGCGGCTAATGCAGAAGAAGCTTCTCTTGCCGGGCAGGACGGTGTCTATGTTGCCAATAATCTT
CGCGAGGTCTGTAGTTATTTATGCCAGGATACGCCATTGCAACCCCTACCCCCCAAGCCAGATGCTTATCATTCTGGGAA
TGAATTGGATTGGTCCGATGTTAAGGGGCAACATCATGCTAAATTAGCCTTAGAAATAGCTGCCTGTGGAGGTCATAGCG
TTTTATTATGCGGCCCCCCAGGCAGTGGTAAGACTATGCTAGCTAAACGTTTCAATACGCTATTACCCCAATTGACCGAA
GAGGAGGCTCTGGAATGTGCAGCGATAAATTCAATTCATGGACGGCAACTTGATTTCCACAAATGGCGTTGCCCTCCTTT
CCGCTCACCACATCACACTGCGTCACCCGTTGCGCTTGTGGGTGGCGGTAACCCCCCTAAACCCGGTGACATTTCCCTCG
CCCATCACGGTGTTTTATTTCTCGATGAACTACCTGAGTTCCATAGACATGTTCTAGAAACCCTTCGCGAGCCCTTAGAA
TCAGGCCATATTTGCATCTCCAGAGCTGCAGTGCAGACGGATTTTCCGGCAAAATTCCAACTTATCGCAGCCATGAATCC
TTGCCCTTGCGGTCAGTGGGGGAATCCTCAAGCCGACTGCTTATGTACACCTGAGCGAATTAACCGTTATTTGGCAAAAT
TATCTGCCCCTTTACTGGATAGAATCGATATGCAAATCAATGTTCAAGCGCTTCCTCAATCGGAGTTGATTAAGCCTCAC
GAACATGGAGGGACACAAAGTGATGAGATAAGGCAATTCGTTACAAAAACTCGGTTAATACAACTGGAACGCCAAAACTG
CATCAATGCTCAATTAAGTGTGAAGGATTGTGAGCGTATTTGCGAATTAAAAGACGAAGAACGACAATTTCTAAGCTATG
CACTAGATCGCCTTAAATTATCAGCTCGCGCCTATCACCGCCTTCTTAAAGTAGCGAGAACTATTGCAGATATGAATGGA
TTAGCACGAGTAGAACTTAGTTGCTTACAACAGTCACTATCGTTTAAGCAGACGATTAAGCAGCAAAGTAAAGAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098GH67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

74.349

98.812

0.735
  comM Legionella pneumophila strain ERS1305867

74.349

98.812

0.735
  comM Haemophilus influenzae Rd KW20

51.786

99.802

0.517
  comM Vibrio cholerae strain A1552

51.411

98.218

0.505
  comM Vibrio campbellii strain DS40M4

50.803

98.614

0.501
  comM Glaesserella parasuis strain SC1401

50.2

99.01

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.522

97.822

0.426

Multiple sequence alignment