Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LMI_RS02160 | Genome accession | NZ_LN614830 |
| Coordinates | 459719..460189 (-) | Length | 156 a.a. |
| NCBI ID | WP_045098335.1 | Uniprot ID | A0A098GEA4 |
| Organism | Legionella micdadei strain ATCC 33218 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 454719..465189
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMI_RS15030 (LMI_CDS455772D) | rpmJ | 455772..455885 (+) | 114 | WP_074454232.1 | 50S ribosomal protein L36 | - |
| LMI_RS02130 (LMI_0457) | rpsM | 455965..456318 (+) | 354 | WP_045098329.1 | 30S ribosomal protein S13 | - |
| LMI_RS02135 (LMI_0458) | rpsK | 456339..456737 (+) | 399 | WP_045098330.1 | 30S ribosomal protein S11 | - |
| LMI_RS02140 (LMI_0459) | rpsD | 456755..457375 (+) | 621 | WP_045098331.1 | 30S ribosomal protein S4 | - |
| LMI_RS02145 (LMI_0460) | rpoA | 457394..458386 (+) | 993 | WP_045098332.1 | DNA-directed RNA polymerase subunit alpha | - |
| LMI_RS02150 (LMI_0461) | rplQ | 458404..458790 (+) | 387 | WP_045098333.1 | 50S ribosomal protein L17 | - |
| LMI_RS02155 (LMI_0462) | - | 458961..459650 (+) | 690 | WP_045098334.1 | hypothetical protein | - |
| LMI_RS02160 (LMI_0463) | ssb | 459719..460189 (-) | 471 | WP_045098335.1 | single-stranded DNA-binding protein | Machinery gene |
| LMI_RS02165 (LMI_0464) | - | 460297..461607 (-) | 1311 | WP_231852274.1 | MFS transporter | - |
| LMI_RS02170 (LMI_0465) | fabL | 461893..462648 (+) | 756 | WP_045098337.1 | enoyl-[acyl-carrier-protein] reductase FabL | - |
| LMI_RS02175 (LMI_0466) | hutG | 462706..463491 (-) | 786 | WP_045098338.1 | N-formylglutamate deformylase | - |
| LMI_RS02180 (LMI_0467) | - | 463498..464883 (-) | 1386 | WP_045098339.1 | formimidoylglutamate deiminase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17562.49 Da Isoelectric Point: 5.0106
>NTDB_id=1113642 LMI_RS02160 WP_045098335.1 459719..460189(-) (ssb) [Legionella micdadei strain ATCC 33218]
MARGINKVILVGNVGVDPDVRYMPNGNAVTTLSVATSETWKDKQTGEKQERTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKTGGSVNYEDMPSSPQTQHQPNSRKPQAALSPQDAFDELDDDIPF
MARGINKVILVGNVGVDPDVRYMPNGNAVTTLSVATSETWKDKQTGEKQERTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKTGGSVNYEDMPSSPQTQHQPNSRKPQAALSPQDAFDELDDDIPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1113642 LMI_RS02160 WP_045098335.1 459719..460189(-) (ssb) [Legionella micdadei strain ATCC 33218]
ATGGCTCGTGGGATCAATAAAGTTATCTTGGTAGGAAATGTCGGCGTTGACCCAGATGTAAGATATATGCCGAATGGCAA
CGCGGTAACCACCTTATCAGTAGCTACTAGTGAAACATGGAAGGATAAGCAAACTGGAGAAAAACAAGAGCGTACTGAAT
GGCATCGTGTGGTCTGTTTCAATCGGTTAGGCGAAATTGCCGGCGAATACATCCGCAAAGGTTCAAAATTGTATGTTGAA
GGCAGTCTGCGTACTCGTAAATGGCAAGATCAACAGGGGCAAGATCGTTATACAACTGAAATTGTTGCGTCTGATATCCA
AATGCTGGACAGCAAAACTGGTGGTTCCGTTAATTATGAAGATATGCCTTCTTCACCTCAAACACAACACCAACCAAATT
CCCGTAAACCACAAGCAGCTCTTTCACCACAAGACGCTTTTGATGAATTGGATGATGATATTCCGTTTTAA
ATGGCTCGTGGGATCAATAAAGTTATCTTGGTAGGAAATGTCGGCGTTGACCCAGATGTAAGATATATGCCGAATGGCAA
CGCGGTAACCACCTTATCAGTAGCTACTAGTGAAACATGGAAGGATAAGCAAACTGGAGAAAAACAAGAGCGTACTGAAT
GGCATCGTGTGGTCTGTTTCAATCGGTTAGGCGAAATTGCCGGCGAATACATCCGCAAAGGTTCAAAATTGTATGTTGAA
GGCAGTCTGCGTACTCGTAAATGGCAAGATCAACAGGGGCAAGATCGTTATACAACTGAAATTGTTGCGTCTGATATCCA
AATGCTGGACAGCAAAACTGGTGGTTCCGTTAATTATGAAGATATGCCTTCTTCACCTCAAACACAACACCAACCAAATT
CCCGTAAACCACAAGCAGCTCTTTCACCACAAGACGCTTTTGATGAATTGGATGATGATATTCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
51.685 |
100 |
0.59 |
| ssb | Vibrio cholerae strain A1552 |
49.143 |
100 |
0.551 |
| ssb | Neisseria meningitidis MC58 |
41.477 |
100 |
0.468 |
| ssb | Neisseria gonorrhoeae MS11 |
41.477 |
100 |
0.468 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
33.333 |
100 |
0.372 |