Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LFA_RS15535 Genome accession   NZ_LN614827
Coordinates   3735553..3737064 (+) Length   503 a.a.
NCBI ID   WP_045096981.1    Uniprot ID   A0A098G8B1
Organism   Legionella fallonii LLAP-10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3730553..3742064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFA_RS15495 (LFA_3383) - 3730857..3731507 (+) 651 WP_045096973.1 TVP38/TMEM64 family protein -
  LFA_RS15500 (LFA_3384) - 3731518..3732336 (-) 819 WP_157010391.1 aminotransferase class IV -
  LFA_RS15505 (LFA_3385) - 3732349..3732534 (-) 186 WP_045096975.1 PA3496 family putative envelope integrity protein -
  LFA_RS15510 (LFA_3386) - 3732746..3733327 (+) 582 WP_045096976.1 5-formyltetrahydrofolate cyclo-ligase -
  LFA_RS15515 (LFA_3387) - 3733343..3733681 (-) 339 WP_045096977.1 P-II family nitrogen regulator -
  LFA_RS15520 (LFA_3388) - 3733776..3734300 (-) 525 WP_045096978.1 GNAT family N-acetyltransferase -
  LFA_RS15525 (LFA_3389) - 3734439..3734879 (+) 441 WP_045096979.1 hypothetical protein -
  LFA_RS15530 (LFA_3390) ubiK 3735039..3735296 (+) 258 WP_045096980.1 ubiquinone biosynthesis accessory factor UbiK -
  LFA_RS15535 (LFA_3391) comM 3735553..3737064 (+) 1512 WP_045096981.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LFA_RS15540 (LFA_3392) - 3737273..3738622 (+) 1350 WP_045096982.1 hypothetical protein -
  LFA_RS15545 (LFA_3393) - 3738789..3740567 (+) 1779 WP_052674005.1 ABC transporter ATP-binding protein -
  LFA_RS15550 (LFA_3394) - 3740656..3741819 (+) 1164 WP_052674006.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54499.86 Da        Isoelectric Point: 8.5748

>NTDB_id=1113635 LFA_RS15535 WP_045096981.1 3735553..3737064(+) (comM) [Legionella fallonii LLAP-10]
MNLAFTKTRSAIGIMAQSVSVEVHLSNGLPGFAIVGLAETAVKESKDRVRSAIINSNFEFPCRKITVNLGPADLPKTGSG
FDLPIALGILAASGQIPHKNLIGHEFIGELALSGELRAVSAIIPVVLAAHRDKQLLIIAHANADEASLTGSPEVYVANNL
REVCAYLSKDATLSGLPPRPTIHSTHQELDWSDIKGQFHAKNAMEIAACGGHSILLSGAPGSGKTMLAKRFATLLPELTE
TQALECAAINSIRGKSPDFSQWRSPPFRAPHHTASPMSLVGGGNPPKPGEISLAHHGVLFLDELPEFNRNVLETLREPLE
SGHICISRAAAQIEFPAQFQLLAAMNPCPCGQWGNSQANCLCSPERISRYLSKLSAPLLDRIDMHITVHALSQQELVKPN
SNPDKQSLIIREKVITIRKIQTDRQHCLNANLSAKACELVSKLGDAEQNFLSQAMNQLKLSARGYHRLLKVARTIADMNH
NPIVSLKHLQQALSFKQPLQLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1113635 LFA_RS15535 WP_045096981.1 3735553..3737064(+) (comM) [Legionella fallonii LLAP-10]
ATGAATCTCGCATTCACTAAAACGCGTAGTGCCATAGGTATTATGGCCCAATCCGTATCAGTAGAAGTCCATTTATCTAA
TGGTTTACCGGGTTTTGCTATAGTCGGACTTGCTGAAACTGCTGTCAAAGAAAGCAAAGACAGAGTTCGCAGCGCTATTA
TCAACAGCAACTTTGAATTCCCTTGCCGCAAAATTACCGTTAATTTAGGGCCCGCCGATTTACCTAAGACAGGCAGTGGT
TTTGATCTACCGATAGCCTTGGGTATTCTTGCTGCCTCAGGTCAAATTCCCCATAAAAATTTAATAGGTCATGAATTCAT
AGGAGAACTTGCTTTAAGTGGCGAACTAAGAGCTGTTTCTGCAATTATCCCCGTAGTTCTTGCTGCCCATAGGGATAAAC
AACTATTAATTATTGCTCATGCCAACGCCGATGAAGCTTCATTAACGGGCTCTCCAGAGGTGTATGTCGCCAACAATTTA
AGGGAGGTTTGCGCTTATCTTAGCAAAGATGCTACTTTATCTGGCTTGCCTCCTAGACCCACTATCCATTCAACCCATCA
GGAATTAGATTGGTCTGATATCAAAGGACAGTTCCATGCCAAAAACGCGATGGAAATCGCTGCCTGCGGTGGACATAGCA
TTTTATTAAGTGGCGCTCCAGGAAGTGGTAAGACCATGCTGGCAAAACGTTTTGCTACCTTATTACCAGAACTCACCGAA
ACTCAAGCTTTAGAATGTGCTGCAATTAACTCCATCCGCGGTAAGTCACCTGATTTTTCTCAATGGCGATCCCCCCCTTT
TCGCGCACCGCATCACACAGCCTCACCTATGTCTTTAGTTGGGGGGGGAAATCCTCCTAAGCCCGGAGAAATTTCATTGG
CTCATCACGGCGTTTTATTTCTCGATGAATTACCTGAATTTAATCGAAACGTACTTGAAACGCTTAGAGAACCACTAGAA
TCAGGGCATATTTGTATTTCTAGAGCTGCTGCACAAATAGAGTTCCCAGCACAATTTCAATTACTCGCAGCCATGAATCC
ATGCCCTTGTGGGCAATGGGGCAATTCACAGGCAAACTGTCTGTGCTCCCCTGAACGTATTAGTCGCTACCTGAGCAAAT
TGTCTGCCCCGCTACTCGATAGAATTGATATGCATATTACTGTTCACGCCTTATCTCAACAAGAACTAGTAAAACCTAAT
AGCAACCCAGACAAACAAAGTCTTATTATCCGCGAAAAAGTAATCACCATCAGAAAAATACAAACCGATAGGCAACATTG
TCTTAATGCTAACTTAAGTGCCAAAGCTTGTGAGTTAGTAAGTAAACTAGGCGATGCAGAACAAAATTTTCTAAGCCAAG
CGATGAACCAACTTAAATTATCTGCTCGTGGCTACCATCGCTTACTCAAAGTAGCTAGAACTATAGCGGATATGAATCAC
AATCCAATAGTAAGTTTAAAACATTTACAACAAGCACTATCGTTTAAACAACCATTACAGTTACCCAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098G8B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

79.523

100

0.795
  comM Legionella pneumophila strain ERS1305867

79.523

100

0.795
  comM Haemophilus influenzae Rd KW20

49.901

100

0.501
  comM Vibrio cholerae strain A1552

50.605

98.608

0.499
  comM Vibrio campbellii strain DS40M4

49.497

98.807

0.489
  comM Glaesserella parasuis strain SC1401

47.723

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.34

100

0.433

Multiple sequence alignment