Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9G17_RS02555 Genome accession   NZ_CM004509
Coordinates   590772..591293 (+) Length   173 a.a.
NCBI ID   WP_039127675.1    Uniprot ID   A0A1B9JHD6
Organism   Gilliamella sp. wkB7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 585772..596293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9G17_RS02525 (A9G17_02525) - 586434..587135 (+) 702 WP_065737357.1 YggS family pyridoxal phosphate-dependent enzyme -
  A9G17_RS02530 (A9G17_02530) - 587173..587730 (+) 558 WP_065737358.1 YggT family protein -
  A9G17_RS02535 (A9G17_02535) - 587770..588192 (-) 423 WP_065737359.1 YcgN family cysteine cluster protein -
  A9G17_RS02540 (A9G17_02540) - 588189..588437 (-) 249 WP_081301645.1 YcgL domain-containing protein -
  A9G17_RS02545 (A9G17_02545) - 588457..589416 (-) 960 WP_039127669.1 glucokinase -
  A9G17_RS02550 (A9G17_02550) corA 589612..590553 (-) 942 WP_039127672.1 magnesium/cobalt transporter CorA -
  A9G17_RS02555 (A9G17_02555) ssb 590772..591293 (+) 522 WP_039127675.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19060.00 Da        Isoelectric Point: 4.9746

>NTDB_id=111363 A9G17_RS02555 WP_039127675.1 590772..591293(+) (ssb) [Gilliamella sp. wkB7]
MANRGINKVILVGNLGQDPEVRYMPNGNAVANFSVATSESWKDKQTGETRDRTEWHRVVVFGKLAEIAGEYIKKGTQVYL
EGQLQTRKWQDQSGQDRYTTEVVINPIGGTLQILGSRANNNDSYDDGSQNWGQSANNISSAPAAPSRQPNKNAPAPQPKA
PEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=111363 A9G17_RS02555 WP_039127675.1 590772..591293(+) (ssb) [Gilliamella sp. wkB7]
ATGGCAAACCGAGGAATAAATAAAGTCATTTTAGTTGGTAATTTAGGACAAGATCCTGAAGTCCGTTACATGCCAAATGG
AAATGCTGTAGCTAATTTTAGTGTAGCAACCTCAGAATCATGGAAAGATAAACAAACTGGTGAAACCCGTGATCGCACTG
AATGGCATCGAGTTGTCGTTTTTGGTAAATTAGCCGAAATTGCTGGTGAATACATCAAAAAAGGTACTCAAGTTTATCTT
GAAGGGCAGCTACAAACTCGAAAATGGCAAGACCAATCAGGACAAGATCGTTACACGACAGAAGTAGTCATTAATCCTAT
CGGTGGAACTTTACAAATTCTAGGCTCACGTGCAAACAATAATGATAGTTATGATGATGGCTCTCAAAATTGGGGGCAAA
GTGCCAATAATATTTCATCGGCACCGGCTGCACCATCTCGTCAACCAAATAAAAATGCGCCTGCACCACAACCTAAAGCA
CCAGAACCACCAATGGATTTTGATGACGACATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9JHD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.341

100

0.624
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.555
  ssb Neisseria gonorrhoeae MS11

50.276

100

0.526
  ssb Neisseria meningitidis MC58

49.724

100

0.52
  ssb Latilactobacillus sakei subsp. sakei 23K

35.593

100

0.364

Multiple sequence alignment