Detailed information NTG0111354

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BN1079_RS14035
• Genome accession: NZ_CCSF01000001
• Coordinates: 3030569..3031633 (+)
• Length: 354 a.a.
• NCBI ID: WP_037025465.1
• Uniprot ID: A0A078M0F9
• Organism: Pseudomonas saudiphocaensis strain 20_BN
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3025569..3036633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BN1079_RS14020 (BN1079_02878)	-	3025602..3026399 (+)	798	WP_037025457.1	thermonuclease family protein	-
BN1079_RS14025 (BN1079_02879)	-	3026562..3027830 (+)	1269	WP_037025460.1	malic enzyme-like NAD(P)-binding protein	-
BN1079_RS14030 (BN1079_02880)	-	3027950..3030385 (-)	2436	WP_037025463.1	penicillin-binding protein 1A	-
BN1079_RS14035 (BN1079_02881)	comM	3030569..3031633 (+)	1065	WP_037025465.1	pilus assembly protein PilM	Machinery gene
BN1079_RS14040 (BN1079_02882)	pilN	3031633..3032205 (+)	573	WP_037025468.1	type 4a pilus biogenesis protein PilN	-
BN1079_RS14045 (BN1079_02883)	pilO	3032202..3032825 (+)	624	WP_037025471.1	type 4a pilus biogenesis protein PilO	-
BN1079_RS14050 (BN1079_02884)	pilP	3032822..3033349 (+)	528	WP_037025474.1	type 4a pilus biogenesis lipoprotein PilP	-
BN1079_RS14055 (BN1079_02885)	pilQ	3033403..3035514 (+)	2112	WP_037025477.1	type IV pilus secretin PilQ	Machinery gene
BN1079_RS14060 (BN1079_02886)	aroK	3035520..3036065 (+)	546	WP_074436845.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37841.21 Da
• Isoelectric Point: 4.6355

>NTDB_id=111354 BN1079_RS14035 WP_037025465.1 3030569..3031633(+) (comM) [Pseudomonas saudiphocaensis strain 20_BN]
MLGLFTKKANTLLGIDISSTSVKLIELSRSGSRYRVESYAVEPLPPNAVVEKNIVELEGVGQALNRLLAKAKAGSKTAAV
AVSGSAVITKTIEMEAGLNDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAARAPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERAYGLLSSQLGSGHDELTVALVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKDAVVQQVSRSLQFFFAAGQFHDVDYILLAGGTASIPGLDRLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPSLMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=111354 BN1079_RS14035 WP_037025465.1 3030569..3031633(+) (comM) [Pseudomonas saudiphocaensis strain 20_BN]
GTGCTAGGGCTCTTCACGAAGAAAGCGAACACGCTGCTTGGGATCGACATCAGTTCGACGTCGGTAAAGCTCATAGAATT
AAGCCGTTCGGGCTCCCGTTACCGGGTCGAGTCCTATGCTGTCGAGCCACTGCCGCCAAATGCCGTGGTGGAAAAGAACA
TCGTGGAACTGGAAGGTGTGGGGCAGGCACTGAACCGTCTGCTGGCCAAAGCCAAGGCGGGGAGCAAGACTGCCGCTGTT
GCGGTATCCGGTTCCGCTGTCATCACCAAGACCATCGAAATGGAAGCTGGGCTGAACGACGAGGAGTTGGAAAACCAGCT
AAAGATCGAGGCTGACCAGTACATTCCCTATCCCCTGGAAGAAGTCGCAATCGACTTTGAGGTCCAGGGGCCGGCTGCGC
GCGCGCCGGGGCGTGTCGAGGTGCTTCTGGCCGCATGCCGCAAGGAGAACGTAGAGATTCGTGAGGCAGCGCTGGCGCTG
GCAGGGCTGACTGCGAAGGTGGTTGATGTGGAGGCCTACGCCCTCGAGCGTGCCTATGGGCTGCTGTCGTCGCAGCTAGG
CAGTGGCCACGATGAACTCACCGTCGCGCTGGTTGATATCGGCGCCACCATGACCACGCTGAGCGTCCTGCACAACGGTC
GCACCATCTATACCCGCGAGCAGCTTTTCGGAGGGCGTCAGCTGACCGAAGAGATCCAGCGTCGCTATGGCCTGTCCGTG
GAAGAAGCTGGGCTGGCGAAGAAACAAGGTGGTCTTCCGGATGACTACGACAGCGAGGTGTTGCAACCGTTCAAGGATGC
GGTCGTGCAACAGGTATCGCGCTCGCTGCAGTTTTTCTTTGCTGCGGGCCAGTTCCATGATGTCGATTACATCCTGCTAG
CAGGCGGCACTGCCTCCATTCCCGGGCTCGACCGGTTGATTCAGCAAAAGATCGGAACGCAAACCCTGGTTGCCAACCCC
TTTGCCGACATGGCCTTGAGCAGCAAGGTCAACGCCGGTGCGCTGGCCAGTGATGCGCCGTCCCTGATGATTGCCTGTGG
GCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

3D structure

• AlphaFold DB: A0A078M0F9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	56.497	100	0.565
pilM	Acinetobacter baumannii D1279779	56.497	100	0.565
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	47.324	100	0.475