Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   J5312_RS06300 Genome accession   NZ_JAGFUR010000001
Coordinates   1269711..1269896 (+) Length   61 a.a.
NCBI ID   WP_064969529.1    Uniprot ID   A0AAP3EUW7
Organism   Riemerella anatipestifer strain 20190502E1-H1     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264711..1274896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5312_RS12895 - 1265720..1266238 (+) 519 WP_250206838.1 hypothetical protein -
  J5312_RS06285 (J5312_06285) - 1266288..1268030 (+) 1743 WP_250206839.1 outer membrane beta-barrel protein -
  J5312_RS06290 (J5312_06290) - 1268114..1268323 (+) 210 WP_064969527.1 hypothetical protein -
  J5312_RS06295 (J5312_06295) - 1268417..1269718 (+) 1302 WP_064969528.1 radical SAM/SPASM domain-containing protein -
  J5312_RS06300 (J5312_06300) comA/nlmT 1269711..1269896 (+) 186 WP_064969529.1 cysteine peptidase family C39 domain-containing protein Regulator
  J5312_RS06305 (J5312_06305) - 1269952..1270635 (+) 684 Protein_1248 TraM recognition domain-containing protein -
  J5312_RS06310 (J5312_06310) - 1270789..1273182 (+) 2394 WP_214194185.1 outer membrane beta-barrel family protein -
  J5312_RS06315 (J5312_06315) - 1273264..1273455 (+) 192 WP_064969532.1 hypothetical protein -
  J5312_RS06320 (J5312_06320) - 1273502..1274869 (+) 1368 WP_064969533.1 radical SAM/SPASM domain-containing protein -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 6893.09 Da        Isoelectric Point: 9.0592

>NTDB_id=1112797 J5312_RS06300 WP_064969529.1 1269711..1269896(+) (comA/nlmT) [Riemerella anatipestifer strain 20190502E1-H1]
MNKNSFLPQKDQMDCGPACLAMIAKYYGKKYPIEYLRENTFITREGVSLLGISEAAKKIGF

Nucleotide


Download         Length: 186 bp        

>NTDB_id=1112797 J5312_RS06300 WP_064969529.1 1269711..1269896(+) (comA/nlmT) [Riemerella anatipestifer strain 20190502E1-H1]
TTGAATAAAAATTCTTTCCTCCCCCAAAAAGACCAGATGGACTGTGGTCCAGCTTGCCTTGCAATGATAGCAAAATATTA
CGGCAAGAAATACCCAATAGAATACCTCAGAGAAAATACCTTTATCACCCGTGAAGGTGTTTCGCTTTTGGGTATTAGTG
AAGCTGCCAAAAAGATAGGATTTTGA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(6-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

55.357

91.803

0.508
  comA Streptococcus mitis NCTC 12261

47.458

96.721

0.459
  comA Streptococcus mitis SK321

47.458

96.721

0.459
  comA Streptococcus pneumoniae Rx1

47.458

96.721

0.459
  comA Streptococcus pneumoniae D39

47.458

96.721

0.459
  comA Streptococcus pneumoniae R6

47.458

96.721

0.459
  comA Streptococcus pneumoniae TIGR4

47.458

96.721

0.459
  comA Streptococcus gordonii str. Challis substr. CH1

38.983

96.721

0.377

Multiple sequence alignment