Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KHO07_RS26920 Genome accession   NZ_HG995459
Coordinates   5948612..5949673 (-) Length   353 a.a.
NCBI ID   WP_150735552.1    Uniprot ID   -
Organism   Pseudomonas sp. PP3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5943612..5954673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO07_RS26895 aroK 5944290..5944808 (-) 519 WP_150735557.1 shikimate kinase AroK -
  KHO07_RS26900 pilQ 5944813..5946888 (-) 2076 WP_150735556.1 type IV pilus secretin PilQ Machinery gene
  KHO07_RS26905 - 5946902..5947429 (-) 528 WP_212625988.1 pilus assembly protein PilP -
  KHO07_RS26910 pilO 5947426..5948049 (-) 624 WP_212625989.1 type 4a pilus biogenesis protein PilO -
  KHO07_RS26915 - 5948046..5948612 (-) 567 WP_150735553.1 PilN domain-containing protein -
  KHO07_RS26920 comM 5948612..5949673 (-) 1062 WP_150735552.1 pilus assembly protein PilM Machinery gene
  KHO07_RS26925 - 5949888..5952329 (+) 2442 WP_212625990.1 penicillin-binding protein 1A -
  KHO07_RS26930 - 5952567..5953835 (-) 1269 WP_150735550.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38172.74 Da        Isoelectric Point: 4.7474

>NTDB_id=1112624 KHO07_RS26920 WP_150735552.1 5948612..5949673(-) (comM) [Pseudomonas sp. PP3]
MPGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVIEKNIAELEGVGQALSRVLVKARTSVKNVAV
AVSGSAVITKTIEMDAGLSDDEMESQLKIEADQYIPYPLDEVAIDFEVQGASARNPERVNVLLAACRKENVEVREAVLTL
AGLTARVVDVEAYALERSFGLLASQLAASKERLVAVVDIGATMTTLSVLFNGRIIYTREQLFGGRQLTEEIQRRYGLTVE
QAGLAKKQGGLPDDYVREVLQPFREALVQQVSRSLQFFFASGQYHSVDQILLAGGTASVSGLDRLIEQQLGTPTLVANPF
FEMTLSSKVNAAALTSDAPAMMIACGLALRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1112624 KHO07_RS26920 WP_150735552.1 5948612..5949673(-) (comM) [Pseudomonas sp. PP3]
GTGCCAGGACTCTTCAACAAAAAAGCCAATACGCTTCTAGGGATCGACATCAGCTCCACATCGGTGAAACTTCTGGAGCT
GAGCCGTCAGGGCGACCGTTATCGGGTCGAGGCCTATGCGGTCGAGCCACTGCCTGCCAGCGCGGTGATCGAGAAAAACA
TCGCTGAGCTCGAAGGCGTGGGCCAGGCCCTTTCCCGCGTGCTGGTCAAGGCCAGGACCAGCGTCAAGAACGTCGCCGTG
GCCGTTTCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGATGCGGGGCTTTCCGATGACGAGATGGAAAGCCAGCT
CAAGATCGAGGCCGATCAGTACATCCCTTATCCGCTGGATGAAGTCGCCATCGATTTCGAAGTCCAGGGGGCGTCAGCGC
GCAACCCCGAGCGGGTCAACGTGCTGCTCGCCGCCTGTCGCAAGGAAAACGTCGAGGTTCGCGAAGCGGTATTGACCCTG
GCCGGGCTGACCGCACGGGTGGTCGACGTGGAGGCCTATGCCCTGGAGCGTTCATTCGGTTTGCTGGCCAGTCAGCTGGC
GGCGTCGAAGGAACGTCTGGTGGCGGTGGTCGACATCGGTGCGACCATGACCACCCTGAGCGTGCTGTTCAACGGGCGGA
TCATCTACACCCGCGAACAACTGTTCGGAGGGCGGCAACTGACCGAAGAGATCCAGCGTCGATACGGCCTGACTGTCGAA
CAGGCGGGGCTGGCGAAGAAGCAGGGCGGCCTGCCGGACGATTACGTGCGCGAGGTGTTGCAGCCGTTTCGCGAGGCGCT
GGTACAGCAGGTGTCCCGTTCGTTGCAGTTTTTCTTCGCGTCCGGTCAGTACCACTCAGTCGATCAGATTCTTTTGGCCG
GCGGCACCGCTTCGGTTTCCGGGCTGGATCGATTGATCGAGCAGCAGTTGGGTACGCCGACACTGGTCGCCAATCCGTTT
TTCGAGATGACCCTGAGCAGCAAGGTCAACGCCGCGGCCCTGACCAGCGATGCCCCGGCCATGATGATCGCCTGCGGGCT
GGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.429

99.15

0.55
  pilM Acinetobacter baumannii D1279779

55.143

99.15

0.547
  comM Acinetobacter baylyi ADP1

53.714

99.15

0.533
  pilM Legionella pneumophila strain ERS1305867

47.175

100

0.473

Multiple sequence alignment