Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | KHN94_RS13325 | Genome accession | NZ_HG992758 |
| Coordinates | 2925477..2926070 (-) | Length | 197 a.a. |
| NCBI ID | WP_182011508.1 | Uniprot ID | - |
| Organism | Vibrio sp. B1FLJ16 isolate B1REV17 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2920477..2931070
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHN94_RS13305 (ACOMICROBIO_LOCUS1902) | aroB | 2921368..2922468 (-) | 1101 | WP_182032323.1 | 3-dehydroquinate synthase | - |
| KHN94_RS13310 (ACOMICROBIO_LOCUS1903) | aroK | 2922500..2923018 (-) | 519 | WP_182011505.1 | shikimate kinase AroK | - |
| KHN94_RS13315 (ACOMICROBIO_LOCUS1904) | pilQ | 2923207..2924940 (-) | 1734 | WP_182011506.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| KHN94_RS13320 (ACOMICROBIO_LOCUS1905) | pilP | 2924972..2925487 (-) | 516 | WP_182011507.1 | pilus assembly protein PilP | Machinery gene |
| KHN94_RS13325 (ACOMICROBIO_LOCUS1906) | pilO | 2925477..2926070 (-) | 594 | WP_182011508.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| KHN94_RS13330 (ACOMICROBIO_LOCUS1907) | pilN | 2926063..2926638 (-) | 576 | WP_182032322.1 | PilN domain-containing protein | Machinery gene |
| KHN94_RS13335 (ACOMICROBIO_LOCUS1908) | pilM | 2926622..2927638 (-) | 1017 | WP_182032321.1 | type IV pilus assembly protein PilM | Machinery gene |
| KHN94_RS13340 (ACOMICROBIO_LOCUS1909) | - | 2927781..2930348 (+) | 2568 | WP_182032320.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23019.50 Da Isoelectric Point: 4.8225
>NTDB_id=1112541 KHN94_RS13325 WP_182011508.1 2925477..2926070(-) (pilO) [Vibrio sp. B1FLJ16 isolate B1REV17]
MVNWQDLEMDEIAEWPLIPQLITIGLIVLLLQGVGYWFYLTPKEERLNSLIQQEETLKVTLRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSESFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLIPQLITIGLIVLLLQGVGYWFYLTPKEERLNSLIQQEETLKVTLRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSESFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=1112541 KHN94_RS13325 WP_182011508.1 2925477..2926070(-) (pilO) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGGTTAACTGGCAAGATCTGGAAATGGATGAGATTGCTGAATGGCCTTTAATACCTCAGTTGATCACCATTGGGTTGAT
TGTTCTCCTTTTGCAGGGCGTTGGTTACTGGTTTTATCTCACTCCTAAGGAAGAGCGTCTGAATAGTCTCATCCAGCAGG
AAGAGACGCTGAAAGTCACATTGCGGATTAAAGCTAATAAGGTAGCTGCACTGCCGCAACTTCAGTCCCAGTTAGATGAG
TTAACAACCCGCTACGAGTTACTGCTGCAGCAATTGCCAGCACAAAAAGAACTCGCGACTATGCTGGCATCAGTGAACGA
GTTAGGTATCGACAACAAACTGACCTTTACCCGTATCGACTGGGGTGAAAAGCAGTCTGAAAGCTTTTTGTACCGACTAC
CACTTAACATCGAGTTAACCGGGGATTTTCATGACATCGGTCGTTTCTCACAGGCGATTGCGACTTTACCACGCATCATC
ACGTTCAAAGATGTGACCTGGCAGCGCGTCAGTCAGGAGAGTGAAACGCTGCACTTTCGTGTGAGAGCGAACACCTACCA
GTTCAAACCAGAGGAAAAGAAAGATGAAAAATAG
ATGGTTAACTGGCAAGATCTGGAAATGGATGAGATTGCTGAATGGCCTTTAATACCTCAGTTGATCACCATTGGGTTGAT
TGTTCTCCTTTTGCAGGGCGTTGGTTACTGGTTTTATCTCACTCCTAAGGAAGAGCGTCTGAATAGTCTCATCCAGCAGG
AAGAGACGCTGAAAGTCACATTGCGGATTAAAGCTAATAAGGTAGCTGCACTGCCGCAACTTCAGTCCCAGTTAGATGAG
TTAACAACCCGCTACGAGTTACTGCTGCAGCAATTGCCAGCACAAAAAGAACTCGCGACTATGCTGGCATCAGTGAACGA
GTTAGGTATCGACAACAAACTGACCTTTACCCGTATCGACTGGGGTGAAAAGCAGTCTGAAAGCTTTTTGTACCGACTAC
CACTTAACATCGAGTTAACCGGGGATTTTCATGACATCGGTCGTTTCTCACAGGCGATTGCGACTTTACCACGCATCATC
ACGTTCAAAGATGTGACCTGGCAGCGCGTCAGTCAGGAGAGTGAAACGCTGCACTTTCGTGTGAGAGCGAACACCTACCA
GTTCAAACCAGAGGAAAAGAAAGATGAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
89.474 |
96.447 |
0.863 |
| pilO | Vibrio cholerae strain A1552 |
72.081 |
100 |
0.721 |