Detailed information NTG1112543

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: KHN94_RS13335
• Genome accession: NZ_HG992758
• Coordinates: 2926622..2927638 (-)
• Length: 338 a.a.
• NCBI ID: WP_182032321.1
• Uniprot ID: -
• Organism: Vibrio sp. B1FLJ16 isolate B1REV17
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2921622..2932638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHN94_RS13310 (ACOMICROBIO_LOCUS1903)	aroK	2922500..2923018 (-)	519	WP_182011505.1	shikimate kinase AroK	-
KHN94_RS13315 (ACOMICROBIO_LOCUS1904)	pilQ	2923207..2924940 (-)	1734	WP_182011506.1	type IV pilus secretin PilQ family protein	Machinery gene
KHN94_RS13320 (ACOMICROBIO_LOCUS1905)	pilP	2924972..2925487 (-)	516	WP_182011507.1	pilus assembly protein PilP	Machinery gene
KHN94_RS13325 (ACOMICROBIO_LOCUS1906)	pilO	2925477..2926070 (-)	594	WP_182011508.1	type 4a pilus biogenesis protein PilO	Machinery gene
KHN94_RS13330 (ACOMICROBIO_LOCUS1907)	pilN	2926063..2926638 (-)	576	WP_182032322.1	PilN domain-containing protein	Machinery gene
KHN94_RS13335 (ACOMICROBIO_LOCUS1908)	pilM	2926622..2927638 (-)	1017	WP_182032321.1	type IV pilus assembly protein PilM	Machinery gene
KHN94_RS13340 (ACOMICROBIO_LOCUS1909)	-	2927781..2930348 (+)	2568	WP_182032320.1	PBP1A family penicillin-binding protein	-
KHN94_RS13345 (ACOMICROBIO_LOCUS1910)	oxyR	2930415..2931323 (-)	909	WP_182032319.1	DNA-binding transcriptional regulator OxyR	-
KHN94_RS13350 (ACOMICROBIO_LOCUS1911)	-	2931481..2932209 (+)	729	WP_182032318.1	redoxin family protein	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 37688.84 Da
• Isoelectric Point: 6.7272

>NTDB_id=1112543 KHN94_RS13335 WP_182032321.1 2926622..2927638(-) (pilM) [Vibrio sp. B1FLJ16 isolate B1REV17]
MDKLIVTGIDIGHNSLKAVVLKPNGDKYALLGYKEILLKDGIVAENNTINHQEIVNTLKQLKKELPFGARKVAISVPDNA
VISKKLNIEQNVEENEVEFAVVQAFSHQSPFPVEELSLDFVRLNTEEGQRGVASYQVFATRKDVVESRVEALNKSGLKPV
LVDVHSQSLGHIWKLAAERFPDKNKYGLLDVGSHSSSFTMFTEQGELFHKEFACGTSSLPRTSQEEVLTEDAHSQTEQFN
RQMVERVKRQIQLYTSINGSQNIKGIWLSGDGAATPMLAEELSHQLALECELMNPLGLFEMNVSKRKRRAADWQHFSTAA
GLAVRGIQWLGGQRALSH

Nucleotide

• Length: 1017 bp

>NTDB_id=1112543 KHN94_RS13335 WP_182032321.1 2926622..2927638(-) (pilM) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCACAACAGCCTCAAAGCCGTAGTACTTAAACCCAATGGCGATAA
ATACGCCTTATTGGGTTACAAAGAAATATTACTTAAGGACGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAATACCCTCAAGCAGCTGAAAAAAGAGCTGCCTTTTGGGGCTCGGAAAGTCGCAATTTCGGTTCCTGACAATGCG
GTTATCAGCAAAAAGCTCAACATTGAACAAAACGTCGAAGAAAACGAGGTTGAGTTTGCGGTTGTGCAGGCTTTTTCTCA
CCAATCCCCTTTCCCGGTTGAAGAACTGAGTCTGGACTTTGTCCGTCTTAACACTGAAGAAGGGCAGAGAGGAGTAGCCA
GCTATCAGGTGTTTGCTACGCGTAAAGATGTTGTAGAAAGTCGGGTTGAGGCATTAAACAAATCTGGTCTTAAGCCTGTT
TTGGTTGACGTACACTCACAAAGCCTCGGGCATATCTGGAAACTGGCAGCAGAACGTTTTCCGGATAAGAACAAGTACGG
GTTGCTCGATGTCGGCTCACATTCTAGCTCGTTCACGATGTTCACCGAGCAAGGGGAGCTTTTCCATAAAGAGTTTGCTT
GCGGAACATCTTCCCTTCCTCGGACTTCTCAAGAGGAAGTTCTGACCGAAGACGCGCATAGCCAGACGGAACAATTTAAC
CGACAGATGGTTGAACGGGTCAAGCGTCAGATACAGCTGTATACCTCTATCAATGGTTCACAAAATATCAAAGGTATTTG
GTTATCGGGCGATGGAGCCGCAACCCCTATGCTTGCCGAAGAGCTATCGCATCAGCTGGCACTGGAGTGTGAGTTAATGA
ACCCGCTAGGTCTGTTTGAGATGAATGTGTCTAAACGCAAGCGCAGGGCAGCTGACTGGCAGCACTTTTCTACCGCTGCG
GGGCTGGCAGTCAGAGGTATTCAATGGTTAGGAGGTCAACGTGCTTTATCGCATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio campbellii strain DS40M4	81.657	100	0.817
pilM	Vibrio cholerae strain A1552	50.149	99.112	0.497